PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7240
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 477aa    MW: 52720.8 Da    PI: 5.1334
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7240genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.6e-34261315155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr+rW+peLHe+Fveav+qLGGs+kAtPk +l+lm+v+gLt++hvkSHLQkYR+
  Tp57577_TGAC_v2_mRNA7240 261 KPRMRWSPELHEAFVEAVNQLGGSDKATPKGVLNLMNVEGLTIYHVKSHLQKYRT 315
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.22258318IPR017930Myb domain
SuperFamilySSF466898.78E-18259315IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-32259317IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24261315IPR006447Myb domain, plants
PfamPF002499.5E-10263314IPR001005SANT/Myb domain
PfamPF143793.6E-20348391IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
LCLFLSSSLL FYTLPPSPSN NSSFFFDISN QSSGSAKVNS LEASKTMHSS SSPVLPTLME  60
SKCMKPPDSF HCSPGRGLNT NPTSMQAASL NPIRSVRPVF STTVECPGGI PFSPISQHDK  120
QYQDSPFASQ TLGDNVSSET HSTAFTSHPQ QNDDISWGPD PLQDILSFPE LFSVQNDPVE  180
NSAACYMNDD NVKKSDFGEW VEQLMTIDDT LHPNWNQLLG DDNAAEPTPK AMQVSQKPHT  240
PSAEVNILCN SASASTASQS KPRMRWSPEL HEAFVEAVNQ LGGSDKATPK GVLNLMNVEG  300
LTIYHVKSHL QKYRTARYKP ESPEETSEKK MSSIEEMKSL DLKTSKGITE ALRLQMELQK  360
RLHEQLEIQR KLQIQIENQG KHLEMMFEKQ KLIVDNKGST TSNAPSSALL DTALPSPVDN  420
SKTSNDERGK LRCNTEESSQ DASKKEMVDE AEVTNEHERV DDQFSDVPPT KRAKIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-30261319260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-30261319260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-30261319260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-30261319260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-30261319260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-30261319260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-30261319260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-30261319260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450552.10.0protein PHR1-LIKE 1
RefseqXP_024626375.10.0protein PHR1-LIKE 1
TrEMBLA0A072UFL50.0A0A072UFL5_MEDTR; Myb-like transcription factor family protein
STRINGXP_004494732.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.21e-83G2-like family protein