PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Whirly | ||||||||
Protein Properties | Length: 256aa MW: 28574.7 Da PI: 10.3021 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 188.5 | 1.1e-58 | 78 | 212 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85 svyk+kaa+++ + +ptf++ldsg+l+++r+G++++ +++a++erkyd +kkq+falsatev++l+ +++++sceffhdp++k+s Tp57577_TGAC_v2_mRNA7189 78 SVYKGKAAFSLSPCLPTFTKLDSGALVVDRRGSIMMSFMPAIGERKYDSDKKQRFALSATEVGSLIAMGPQDSCEFFHDPSMKSS 162 79*********************************************************************************** PP Whirly 86 neGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 n+G+vrk+l+++P+++ G+fv+l+v n+l++++++fsvPv+ aefav++++ Tp57577_TGAC_v2_mRNA7189 163 NAGQVRKSLSIKPHSN--GYFVSLNVVNTLLNTKDNFSVPVTTAEFAVMKTA 212 *************986..7*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.1E-72 | 66 | 235 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.02E-62 | 70 | 254 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.0E-55 | 79 | 211 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MTERKHKPQF RVREKRESVP KMLKLYRMLP SSSSSSSRNQ LLQILSYRKL EVRDFSTSTN 60 NYSAAKGYAS DRIFAPYSVY KGKAAFSLSP CLPTFTKLDS GALVVDRRGS IMMSFMPAIG 120 ERKYDSDKKQ RFALSATEVG SLIAMGPQDS CEFFHDPSMK SSNAGQVRKS LSIKPHSNGY 180 FVSLNVVNTL LNTKDNFSVP VTTAEFAVMK TACSFALPHI MGWDHLTSPT NQQSSGKVSF 240 QPKTNSHILD LEWEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 4e-84 | 70 | 227 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 4e-84 | 70 | 227 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 4e-84 | 70 | 227 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 4e-84 | 70 | 227 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7189 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136833 | 0.0 | BT136833.1 Medicago truncatula clone JCVI-FLMt-6C3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626470.1 | 1e-140 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | Q8VYF7 | 1e-87 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | G7L2W4 | 1e-139 | G7L2W4_MEDTR; Putative transcription factor ssDNA-binding-TF family | ||||
STRING | AES82688 | 1e-140 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-89 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7189 |