PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7182
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 991aa    MW: 111815 Da    PI: 4.7969
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7182genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-13853248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Tp57577_TGAC_v2_mRNA7182  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                              78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Tp57577_TGAC_v2_mRNA7182  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                               68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001679.26E-121053No hitNo description
PfamPF139214.6E-131070No hitNo description
SuperFamilySSF466898.27E-2133106IPR009057Homeodomain-like
CDDcd116592.72E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.2E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118311.3E-61406655IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKKREL KAAGIDVRQR RRKRRGIDYN AEIPFEKRPP PGYFDVADED RTVEQPAFPT  240
TIEELEGKRR IDVEAQLRKQ DVARNKIAER QDAPAAILHA NKLNDPETVR KRSKLMLPPP  300
QISDQELDEI AKLGYASDLV GSEELTEGSS ATRALLSNYP QTPNQAMTPL RTPQRTPASK  360
GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KKEIHTPNPL LTPSATPGSA  420
GLTPRSGMTP LRDGFSFGMT PKGTPLRDEL HINEDMEMHD SAKLELRRQA DMKKSLRSGL  480
SSLPQPKNEY QIVMQPVQED AEEPEEKIEE DMSDRMAREK AEEEARQQAL LRKRSKVLQR  540
ELPRPPPASI ELIRNSLIRA DGDRSSFVPP TNIEQADEMI RRELLTLLEH DNAKYPLEEI  600
ANKEKKKGSK RAANGPAVPV IEDFQEDEMK EADKLIKDEA EHLRVAMGHE NDSLDEFVEA  660
HTTCINDLMY FVTRNAYGLS SVAGNTEKLA ALQNEFENVR SKLDDGKEKL IRLEKKVTLL  720
THGYEMRSKN GIWPQIEATF KQMDMAATEF ECFQGLKKQE QLAAKHRINN LWSEVQKQKE  780
LERTLQKKYG DLMVELERTQ NIMEQFRVEA QQKEEIEAKN HAIEEVEAQQ QEETEAKNHV  840
LEISEATADE INVQGTENCE AVPISADPEI ATVQDQATSS SKVDMDVDSS SEAQATHITG  900
VTLPDAPAAE DENSKAVEGE NIESVIENSE TAVDTSAALE IKSNEENGEG QDVANPDEVM  960
EAANKPDNIK EATLLDDMQV DDGKRDDEAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027973796Cell division cycle 5-like protein
5xjc_L0.027973796Cell division cycle 5-like protein
5yzg_L0.027973796Cell division cycle 5-like protein
5z56_L0.027973796Cell division cycle 5-like protein
5z57_L0.027973796Cell division cycle 5-like protein
5z58_L0.027973796Cell division cycle 5-like protein
6ff4_L0.027973796Cell division cycle 5-like protein
6ff7_L0.027973796Cell division cycle 5-like protein
6icz_L0.027973796Cell division cycle 5-like protein
6id0_L0.027973796Cell division cycle 5-like protein
6id1_L0.027973796Cell division cycle 5-like protein
6qdv_O0.027973796Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KKRELKAAGIDVRQRRRKRR
2198204QRRRKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1022170.0FP102217.2 Medicago truncatula chromosome 5 clone mtrs-65h5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450559.10.0cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A072U4G10.0A0A072U4G1_MEDTR; Cell division control protein, putative
STRINGXP_004494735.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]