PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 126aa MW: 13863.4 Da PI: 6.5036 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.2e-09 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia++++ gRt++++k++w+++l Tp57577_TGAC_v2_mRNA7169 3 RWSAIAAKLP-GRTDNEVKNFWHTHL 27 4*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.682 | 1 | 31 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-13 | 3 | 28 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.2E-7 | 3 | 27 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-8 | 3 | 35 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-7 | 3 | 27 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
LLRWSAIAAK LPGRTDNEVK NFWHTHLKKR VQKNKVHNAN ITSFSYTLQE AQTSDASSSV 60 GEKIVISNYG LVASSKDPSV VGTEFCNAIS CDDTLGENMD NHGSCQISEE MEFWYSVFIK 120 SGQTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7169 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450568.1 | 7e-60 | transcription factor MYB4 isoform X1 | ||||
TrEMBL | A0A072U5D9 | 2e-58 | A0A072U5D9_MEDTR; Myb transcription factor | ||||
STRING | GLYMA19G43740.1 | 3e-42 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 4e-17 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7169 |