PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7048
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 365aa    MW: 41822 Da    PI: 9.8382
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7048genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.6e-2978136259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++WrKYGqK++kgs++pr+YYrC+s  gCp++k+ver++ dp++++itY+++Hnh+
  Tp57577_TGAC_v2_mRNA7048  78 SDSWAWRKYGQKPIKGSPYPRAYYRCSSCkGCPARKQVERNRVDPTMLVITYSSDHNHS 136
                               69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-3172138IPR003657WRKY domain
SuperFamilySSF1182905.1E-2575138IPR003657WRKY domain
SMARTSM007742.1E-3377137IPR003657WRKY domain
PROSITE profilePS5081130.89478138IPR003657WRKY domain
PfamPF031062.8E-2479135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKSKFKNPSY TDDQQEDTDT SQDSPPSSTS FNIDASLTSL SSTSSKKSKR AIQKRVVQIP  60
INEPKGSRLK GESNTPPSDS WAWRKYGQKP IKGSPYPRAY YRCSSCKGCP ARKQVERNRV  120
DPTMLVITYS SDHNHSWPVS RNAATRLSVK KTEPGPVEPD QKFAGHSIVD DELGWLGEIG  180
TITSXXXXXX XXXXXXXXXX XXXXXXXIGV PFHTRGRASI VDMMMIAKIE SLFIFVSFFK  240
CYYHSQPVFT FISIICITTL VYYKSFFIFF NYHILIMLAK TKVSLETYQE NVQIVSRSVS  300
DRLLLKFYDE PQFDFDYEKS GLWSPPVQRT VFLSSPGNIF THQELLERLR NRNARRRIRV  360
FCCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-18781381574WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0084631e-64KF008463.1 Vicia sativa subsp. nigra microsatellite GBrSSR-VSspN-178 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629812.21e-97probable WRKY transcription factor 65 isoform X1
STRINGAET042884e-95(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-46WRKY DNA-binding protein 65