PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 365aa MW: 41822 Da PI: 9.8382 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.6e-29 | 78 | 136 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s gCp++k+ver++ dp++++itY+++Hnh+ Tp57577_TGAC_v2_mRNA7048 78 SDSWAWRKYGQKPIKGSPYPRAYYRCSSCkGCPARKQVERNRVDPTMLVITYSSDHNHS 136 69************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.2E-31 | 72 | 138 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-25 | 75 | 138 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-33 | 77 | 137 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.894 | 78 | 138 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-24 | 79 | 135 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MKSKFKNPSY TDDQQEDTDT SQDSPPSSTS FNIDASLTSL SSTSSKKSKR AIQKRVVQIP 60 INEPKGSRLK GESNTPPSDS WAWRKYGQKP IKGSPYPRAY YRCSSCKGCP ARKQVERNRV 120 DPTMLVITYS SDHNHSWPVS RNAATRLSVK KTEPGPVEPD QKFAGHSIVD DELGWLGEIG 180 TITSXXXXXX XXXXXXXXXX XXXXXXXIGV PFHTRGRASI VDMMMIAKIE SLFIFVSFFK 240 CYYHSQPVFT FISIICITTL VYYKSFFIFF NYHILIMLAK TKVSLETYQE NVQIVSRSVS 300 DRLLLKFYDE PQFDFDYEKS GLWSPPVQRT VFLSSPGNIF THQELLERLR NRNARRRIRV 360 FCCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-18 | 78 | 138 | 15 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7048 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF008463 | 1e-64 | KF008463.1 Vicia sativa subsp. nigra microsatellite GBrSSR-VSspN-178 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629812.2 | 1e-97 | probable WRKY transcription factor 65 isoform X1 | ||||
STRING | AET04288 | 4e-95 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 4e-46 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7048 |