PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Nin-like | ||||||||
Protein Properties | Length: 966aa MW: 106980 Da PI: 5.5348 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.8 | 1.1e-28 | 601 | 651 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCR++GI+RWP+Rki+++ Tp57577_TGAC_v2_mRNA6838 601 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKV 651 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.768 | 585 | 671 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.4E-26 | 603 | 651 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.91E-21 | 857 | 949 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.1E-23 | 862 | 944 | No hit | No description |
SMART | SM00666 | 5.0E-22 | 865 | 947 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 19.171 | 865 | 947 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.0E-17 | 867 | 946 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 966 aa Download sequence Send to blast |
MEYPFYPKGR GIGYWQSPGT QLEESRSLDG GISNLGSEDM PSSFSELMNF DTYAGLCSGP 60 SMTDQIMANE LPSLASVLYQ SPDEFNLVEQ NTGQFYMTGV SGNYNNSESS PIFGEKIVRQ 120 QMDSLLDLLD NNNDANNLSS KQKINDSSQH VNTFDMDNCI ISKPPDLSLD ERMLKALSFF 180 KESAGGGILA QVWVPIKHGG QVYLSTSEQP YLLDQMLAGY REVSRTFTFS TEGKPGFLPG 240 LPGRVFISKV PEWTSNVGYY SPSEYLRVEH ARNHDVRGSI AFPIFDLHSG LPCCAVLELV 300 TTKEKLDFDR ELEIICRSLQ LVNLRTTMPF RLLPECLTNN KRAALTEIVD VLRSVCHAHR 360 LPLALTWIPC FYNEGTRDET TRIQIKEGNS SSREKNILCI EESACYITDR AMEGFVHACI 420 EHPLEEGKGV AGKALQSNHP FFYSDVKTYD ISEYPLVHHA RKFNLNAAVA IRLRSTYTNN 480 DDYILEFFLP INMKGSSEQQ LLLDNLSGTM QKICKSLRTV SGAELSEMES SQEGFEKNSV 540 PSFPPSSKRK SPTPFINESH GSVKKLSSKA SNLRNNGNEP SPNQERNAPK RRAEKYRSSS 600 EKNVSLSVLQ QYFSGSLKDA AKSIGVCPTT LKRICRHHGI SRWPSRKINK VNRSLKKIQT 660 VLDSVEGVEG GLKFDPSVGA FVAKGTAIQE IDENRSLPFP EKSTTEDSEP FSQDAASVPL 720 AHCSDGENSA NKLDEKLKET NASLIDCSED SKSFAMDDCP EQACFGSVLG KGDQWVLNKG 780 GLREEEKCKH NTIGKRTSSF VVYEMDTGVD GDDEAVENNN PASSSLTGSS NSSGSIVHDS 840 SSGYQNLKNQ KQSKSKSIIV DSGSKIVVKA TYGEDTIRFK FDPATGCLKL YEEVASRFKL 900 RNGTFQLKYL DDEKEWVMLV NDSDLQECLE ILNDMGTRNA RFLVRDTPCT FGSSGSSVCY 960 LGGSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6838 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012571480.1 | 0.0 | protein NLP8-like | ||||
Refseq | XP_012571483.1 | 0.0 | protein NLP8-like | ||||
TrEMBL | A0A2Z6M948 | 0.0 | A0A2Z6M948_TRISU; Uncharacterized protein | ||||
STRING | XP_004486872.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6838 |