PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6802
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 159aa    MW: 17904.3 Da    PI: 7.8949
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6802genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26031.16.6e-10492287
                    DUF260  2 CaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilkl 83
                              C  C+v +r +C+++C    yf +e     + +  +FG +n+   + ++      +e  + ++ +++eA+ r  d ++G ++++l  
  Tp57577_TGAC_v2_mRNA6802  4 CTPCRVRKRrDCSPNCLTLTYFEEEV--VVRRILYVFGYDNLRMWMLETlnvgGADETARCAQGIIWEANSRYADHIHGGHRLFLGS 88
                              999**987669**********97776..66778889*****98755554344455667888899*******************9999 PP

                    DUF260 84 qqql 87
                              qqq 
  Tp57577_TGAC_v2_mRNA6802 89 QQQK 92
                              9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.3E-9493IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEICTPCRVR KRRDCSPNCL TLTYFEEEVV VRRILYVFGY DNLRMWMLET LNVGGADETA  60
RCAQGIIWEA NSRYADHIHG GHRLFLGSQQ QKKGFGVMMS GITQMEKMAG LLTAASWLTS  120
DDTRREGLYS QGAITPQSIL PNQSHTTVQM QNHQNSNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A392R5R22e-33A0A392R5R2_9FABA; Uncharacterized protein (Fragment)