PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6755
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YA
Protein Properties Length: 348aa    MW: 38531.9 Da    PI: 8.6727
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6755genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.72.9e-31185241158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               +ep+YVN+KQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg gGrF
  Tp57577_TGAC_v2_mRNA6755 185 EEPIYVNSKQYHAILRRRQCRAKLEAHNKL-IKDRKPYLHESRHVHALKRARGAGGRF 241
                               69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-37183244IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.783184244IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-26186241IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-23187209IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860189209IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-23218241IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKCLCEKDSA HSTPHHVFGC PSWGTSSESE VQQTSMSKSL SFKVEALPQK CHNSKALSFQ  60
FQEQESSSTQ SSGSSQSGQI PFQHSSSTSS TFKRTEENSM GCLIGTSSIG TSNLTIHPPL  120
VDHSQSLAHI AFHFADPCYN GLLCASYGQQ YKAYGIVSSN SDQPLHGQLM EAAPVRIPLP  180
SDMTEEPIYV NSKQYHAILR RRQCRAKLEA HNKLIKDRKP YLHESRHVHA LKRARGAGGR  240
FLNAKKLEES KQASPNHGQN VSTSYTCLNL NGNMSESKTH DLVKNYRDGA SASDVTYASN  300
KNEMFQQQQE LEFRLCSYPS SQTGRNMQEY TADKSVGANQ RRLSVLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-22185245262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6755
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182690.0JQ918269.1 Medicago truncatula nuclear transcription factor Y subunit A4 (NF-YA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633082.10.0nuclear transcription factor Y subunit A-8 isoform X2
TrEMBLA0A2K3N4600.0A0A2K3N460_TRIPR; Nuclear transcription factor Y subunit A-3
STRINGAES678010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-49nuclear factor Y, subunit A3