PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6656
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 327aa    MW: 37475.4 Da    PI: 6.2932
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6656genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.9e-11196239548
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                               kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  Tp57577_TGAC_v2_mRNA6656 196 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 239
                               899*********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-14192256IPR004827Basic-leucine zipper domain
PfamPF077162.6E-9193241IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622194246IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.9E-13196247No hitNo description
SuperFamilySSF579594.18E-11196250No hitNo description
CDDcd147031.41E-22197247No hitNo description
PROSITE patternPS000360199214IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAQLPPKIPN MSPSWPDFSI HQQNIMPNMS QPNNIVTTTN NNHHHSQNPS WVDEFLDFSS  60
ARRGAHRRSV SDSVTFYETP MLDDCPSKQH TNNDNEFDKF DDEQFLSMFN DEIAGVHNMP  120
PTLSSSNPSS PSDQNFFNDE NETNKQEKKV MKKEEGYEKQ LKNEPDEVES QCNQENSHPQ  180
NNNNSTSSND RITDPKRVKR ILANRQSAQR SRVRKLQYIS ELERSVTSLQ AEVSVLSPRV  240
AFLDHQRLLL NVDNSALKQR IAALAQDKIF KDAHQEALKR EIERLRQVYH NQNLKKIENV  300
NGSPLPSPSQ KPMCDAQTEN EQLLNV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465188.11e-170basic leucine zipper 34
SwissprotQ9M2K41e-111BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A2K3NZJ20.0A0A2K3NZJ2_TRIPR; Transcription factor RF2b
STRINGAES829061e-170(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-95bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]