PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6624 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 91aa MW: 10498.9 Da PI: 4.2808 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 23.5 | 1.5e-07 | 1 | 63 | 36 | 98 |
DUF260 36 lFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +FG ++v++ ++a + +er +++sl +e+++r+ +Ga g++l++ +le +++e+++l+ Tp57577_TGAC_v2_mRNA6624 1 MFGWTRVMNWITARNIQERVPLAESLQWEGQIRMTAEFRGARGMFLEVIAELEDARNEISALQ 63 7*********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.9E-5 | 1 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MFGWTRVMNW ITARNIQERV PLAESLQWEG QIRMTAEFRG ARGMFLEVIA ELEDARNEIS 60 ALQVVIQEHD AKINQLHLDI FEVQDEQTAD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6624 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3P3W8 | 3e-22 | A0A2K3P3W8_TRIPR; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A392TDF0 | 8e-22 | A0A392TDF0_9FABA; Uncharacterized protein (Fragment) |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6624 |