PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6576
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 347aa    MW: 39345.4 Da    PI: 5.6628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6576genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12147198155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Tp57577_TGAC_v2_mRNA6576 147 QRMTHITVERNRRKQMNEYLNVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 198
                               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.57E-12145202No hitNo description
PROSITE profilePS5088814.996146197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-13146202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16146209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-10147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9152203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
LFSLLGIHKI MALETVVYPQ DPFNYSYKDN YFNSLSNDYV SVTTNLEAEE QENVLLGIIN  60
NNVEQQQQQQ QNFHANWDSC SVKDQWLEYS HSSSPEICTV DQTITAPSLL IPPSSSTTME  120
EATTTATCRR KRRRIKSAKN KEEIENQRMT HITVERNRRK QMNEYLNVLR SLMPSSYVQR  180
GDQASIIGGA INFVKELEQL LQSMGGQKKT QENIGLNNGP PFSEFFTFPQ YTTSATTTTT  240
HNTNMVTMEQ KQWAVADIEV TMVDSHANMK IMSKKKTGQL MKIVVGLQNL RLTILHLNVT  300
TLDDMVLYSI SVKVEEGSQL NSVDEIAAAV NQLLRTVQQE LDYQLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129133RKRRR
2130134KRRRI
3147158RMTHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6576
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR6970550.0FR697055.1 Medicago truncatula mRNA for basic helix loop helix 1 (bHLH1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602850.10.0transcription factor bHLH94
SwissprotQ9C7T44e-89BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2K3NDZ50.0A0A2K3NDZ5_TRIPR; Transcription factor bHLH96-like protein (Fragment)
STRINGAES731010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]