PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA648

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 225aa MW: 25562 Da PI: 8.2524

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA648	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.4	3.6e-16	46	131	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY+eYA + GF ++++s+k ++ge + Cs+eg++ ++ + +t+++ +C a+l +k+e+dg w+++k++ H+ Tp57577_TGAC_v2_mRNA648 46 SFYREYALRKGFGWKIRTSRKG-DDGELCYLMLSCSREGYSISNVPC---TLKTNPTRVKQCPARLCIKMEEDGLWYIKKFDPSHS 127 5**************99998.9999*********9998777...7889999999************************ PP FAR1 87 Hela 90 He++ Tp57577_TGAC_v2_mRNA648 128 HECS 131 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-14	46	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDCSNKTVDC GSSGHEFIEV DKFQDDGTSW EPAKDMCFSS ADDVKSFYRE YALRKGFGWK 60 IRTSRKGDDG ELCYLMLSCS REGYSISNVP CTLKTNPTRV KQCPARLCIK MEEDGLWYIK 120 KFDPSHSHEC SPTKARLIKA NKKINLHVKR TIEINDDAGV TINKTFQSLV KDAGGHENIP 180 FCEKDVRNYV NKERRAIGKE GDGQALINYF FEMREQNAKL KFGI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA648

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004516444.1	1e-111	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2K3JN18	1e-161	A0A2K3JN18_TRIPR; Uncharacterized protein (Fragment)
STRING	XP_004516444.1	1e-110	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-21	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA648