PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6376
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 343aa    MW: 39265.7 Da    PI: 7.787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6376genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-172876148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l+d++ ++G+g +W + +++ g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA6376 28 RGPWSPEEDSKLKDYISKHGTGgNWISLPHKAGLKRCGKSCRLRWLNYL 76
                              89*********************************************97 PP
2Myb_DNA-binding32.61.9e-1083141246
                               SSS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...............tWktIartmgkgRtlkqcksrwqk 46 
                               g ++ eEd ++  +    G++               +W+ Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA6376  83 GDFSDEEDRIICSLYVNIGSRytftivlqlylsnskRWSIIAAQLP-GRTDNDIKNYWNT 141
                               679*******************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.5372380IPR017930Myb domain
SuperFamilySSF466895.85E-2225139IPR009057Homeodomain-like
SMARTSM007172.0E-122778IPR001005SANT/Myb domain
PfamPF002491.6E-152876IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-242983IPR009057Homeodomain-like
CDDcd001671.99E-93076No hitNo description
SMARTSM007176.8E-981145IPR001005SANT/Myb domain
PROSITE profilePS5129410.68481147IPR017930Myb domain
PfamPF002491.7E-883141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2184147IPR009057Homeodomain-like
CDDcd001674.77E-685143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
LDIHSSKRSF LLREMGRAPC CDKTSVKRGP WSPEEDSKLK DYISKHGTGG NWISLPHKAG  60
LKRCGKSCRL RWLNYLRPNI KHGDFSDEED RIICSLYVNI GSRYTFTIVL QLYLSNSKRW  120
SIIAAQLPGR TDNDIKNYWN TKLKKKLMAL QFPTSSHQRK PQFPPFPSTH PFSNYFTTTH  180
TPFSDFQTIS LPSNNNYPNT SFNPFYQNQE SMISLNPSMQ YNNNMFMFGS EGSCSSSDGS  240
CKEIKQEEIG YHHMNSGGFD DYNNNNFMIN CNNGSVGENI NQYEEKTSGV GYGYNNGQSQ  300
TLTPLLDYGL EDIKQLISSD NKDFSVDEIH KSEENGMYYF HY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22281477108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6376
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945871e-79BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506057.11e-162transcription factor RAX2-like
TrEMBLA0A2K3MQJ50.0A0A2K3MQJ5_TRIPR; Transcription factor RAX2-like protein
STRINGXP_004506057.11e-161(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-72myb domain protein 36