PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6302

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 1101aa MW: 123815 Da PI: 9.7165

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6302	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.7e-08	44	80	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E +++++a +++G++ Wk++a+ + +R+ +++ Tp57577_TGAC_v2_mRNA6302 44 QWSKGELQRFYEAYRKYGKD-WKKVAAAVR-NRSIEMVE 80 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.099	40	93	IPR017884	SANT domain
SuperFamily	SSF46689	6.88E-10	40	88	IPR009057	Homeodomain-like
SMART	SM00717	0.0022	41	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-4	44	79	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	44	84	IPR001005	SANT/Myb domain
CDD	cd00167	1.82E-4	45	79	No hit	No description
SMART	SM01135	4.3E-56	607	708	IPR033471	DIRP domain
Pfam	PF06584	4.9E-32	607	707	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1101 aa Download sequence Send to blast
MAPTRKSRSV NKRFANDVSP EKDGVSSNKN KQRKKKLSDK LGSQWSKGEL QRFYEAYRKY 60 GKDWKKVAAA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLIAMMTDHY NVLEESESER 120 ESNDAPGSRK PVKRKREKVQ PSVSKDPVQS QSVTSGDGCL SLLKKRRIDG IQPRAVGKRT 180 PRVPVYHSYK KDERENYVSP NKRSLKSTGD ANDDEVADVA LALSRAAQRG DSPLISQTPH 240 RRAEQKSSPA QSLERMHQMS EKARAKFRNV VDGEFLEGSL ESRGAENGEY VRDTSSLMDM 300 EGVSNTRVLL KGGKFYRKKE RVENVGNYQL DDGGEACSGT EEGLSFSSLK EKNMEVTNEK 360 LEQFSPRSQR KRSKKLFCAD EINALNALET LADLSLMMPT SNGESESSIQ LKGDRMNVDK 420 DDKSALPEAT STSHKRNKVK PRAVPGADTS TSKKSKLGKD ISNDTNAVSE SKDQIPFADR 480 TWKRKPKSMK AVDDENKTVI KGKHPDQVFA SPKQSKMVKP PEVFLRVDQK GLAVSSTAEI 540 PLLSEVSSQT KQRSRRKMIF QRPSMPKEKS SENVLKSQSN KYSTQKEKLS SCLSSYLVRR 600 WFTFEWFYSA LDYPWFAKRE FVEYLNHVGL GNIPRLTRVE WSVIKSSLGK PRRFSEHFLH 660 EERQKLEQYR DSVRKHYSEL RAGIRDGLPT DLARPLCVGQ RVIAIHPKTR EIHDGSVLTV 720 DHDKCRIQFD RPELGVEFIM DIDCMPSNPF DNMPEALRRQ IGARKASFMT TEPQLNGNSS 780 FGGCEMHSSP VKGDANHVTS QANIDNLCAL AACAQPCKVM QHQAKEADIH ALSELKRALD 840 KKETALTELR NANSGILENQ NGIECLKDSE GFKKHYATVS DTMLQLRQRN TYTDNSLPPW 900 MKPRAKFEVH DDLPSVLDSS MSQESRSTVI EIIKGSRLRA HAMLDAAFQA WSQATKEGKD 960 AITKIGQALD SIDYQQLSSK YRLPVIRSQD QVNGSFYHHN QSTCRASEPL LNDASGPKLH 1020 KDSEQVDIEI PSELIASCVA TLTMIQSCTE RQYPPADVAR ILDSAVTSLQ PCDPRNLPIY 1080 REIQMCMGRI KTQILALIPS *

Sequence ? help Back to Top

Protein Sequence Length: 1101 aa Download sequence Send to blast

MAPTRKSRSV NKRFANDVSP EKDGVSSNKN KQRKKKLSDK LGSQWSKGEL QRFYEAYRKY  60
GKDWKKVAAA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLIAMMTDHY NVLEESESER  120
ESNDAPGSRK PVKRKREKVQ PSVSKDPVQS QSVTSGDGCL SLLKKRRIDG IQPRAVGKRT  180
PRVPVYHSYK KDERENYVSP NKRSLKSTGD ANDDEVADVA LALSRAAQRG DSPLISQTPH  240
RRAEQKSSPA QSLERMHQMS EKARAKFRNV VDGEFLEGSL ESRGAENGEY VRDTSSLMDM  300
EGVSNTRVLL KGGKFYRKKE RVENVGNYQL DDGGEACSGT EEGLSFSSLK EKNMEVTNEK  360
LEQFSPRSQR KRSKKLFCAD EINALNALET LADLSLMMPT SNGESESSIQ LKGDRMNVDK  420
DDKSALPEAT STSHKRNKVK PRAVPGADTS TSKKSKLGKD ISNDTNAVSE SKDQIPFADR  480
TWKRKPKSMK AVDDENKTVI KGKHPDQVFA SPKQSKMVKP PEVFLRVDQK GLAVSSTAEI  540
PLLSEVSSQT KQRSRRKMIF QRPSMPKEKS SENVLKSQSN KYSTQKEKLS SCLSSYLVRR  600
WFTFEWFYSA LDYPWFAKRE FVEYLNHVGL GNIPRLTRVE WSVIKSSLGK PRRFSEHFLH  660
EERQKLEQYR DSVRKHYSEL RAGIRDGLPT DLARPLCVGQ RVIAIHPKTR EIHDGSVLTV  720
DHDKCRIQFD RPELGVEFIM DIDCMPSNPF DNMPEALRRQ IGARKASFMT TEPQLNGNSS  780
FGGCEMHSSP VKGDANHVTS QANIDNLCAL AACAQPCKVM QHQAKEADIH ALSELKRALD  840
KKETALTELR NANSGILENQ NGIECLKDSE GFKKHYATVS DTMLQLRQRN TYTDNSLPPW  900
MKPRAKFEVH DDLPSVLDSS MSQESRSTVI EIIKGSRLRA HAMLDAAFQA WSQATKEGKD  960
AITKIGQALD SIDYQQLSSK YRLPVIRSQD QVNGSFYHHN QSTCRASEPL LNDASGPKLH  1020
KDSEQVDIEI PSELIASCVA TLTMIQSCTE RQYPPADVAR ILDSAVTSLQ PCDPRNLPIY  1080
REIQMCMGRI KTQILALIPS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6302

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151426	1e-121	AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013469040.1	0.0	protein ALWAYS EARLY 3 isoform X4
TrEMBL	A0A2K3NNN3	0.0	A0A2K3NNN3_TRIPR; Always early 2-like protein
STRING	AES61372	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6302