PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 1103aa MW: 124060 Da PI: 9.714 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 44 | 80 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E +++++a +++G++ Wk++a+ + +R+ +++ Tp57577_TGAC_v2_mRNA6301 44 QWSKGELQRFYEAYRKYGKD-WKKVAAAVR-NRSIEMVE 80 6*****************99.*********.***98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.099 | 40 | 93 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 6.88E-10 | 40 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0022 | 41 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-4 | 44 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-7 | 44 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.91E-4 | 45 | 79 | No hit | No description |
SMART | SM01135 | 4.3E-56 | 607 | 708 | IPR033471 | DIRP domain |
Pfam | PF06584 | 4.9E-32 | 607 | 707 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1103 aa Download sequence Send to blast |
MAPTRKSRSV NKRFANDVSP EKDGVSSNKN KQRKKKLSDK LGSQWSKGEL QRFYEAYRKY 60 GKDWKKVAAA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLIAMMTDHY NVLEESESER 120 ESNDAPGSRK PVKRKREKVQ PSVSKDPVQS QSVTSGDGCL SLLKKRRIDG IQPRAVGKRT 180 PRVPVYHSYK KDERENYVSP NKRSLKSTGD ANDDEVADVA LALSRAAQRG DSPLISQTPH 240 RRAEQKSSPA QSLERMHQMS EKARAKFRNV VDGEFLEGSL ESRGAENGEY VRDTSSLMDM 300 EGVSNTRVLL KGGKFYRKKE RVENVGNYQL DDGGEACSGT EEGLSFSSLK EKNMEVTNEK 360 LEQFSPRSQR KRSKKLFCAD EINALNALET LADLSLMMPT SNGESESSIQ LKGDRMNVDK 420 DDKSALPEAT STSHKRNKVK PRAVPGADTS TSKKSKLGKD ISNDTNAVSE SKDQIPFADR 480 TWKRKPKSMK AVDDENKTVI KGKHPDQVFA SPKQSKMVKP PEVFLRVDQK GLAVSSTAEI 540 PLLSEVSSQT KQRSRRKMIF QRPSMPKEKS SENVLKSQSN KYSTQKEKLS SCLSSYLVRR 600 WFTFEWFYSA LDYPWFAKRE FVEYLNHVGL GNIPRLTRVE WSVIKSSLGK PRRFSEHFLH 660 EERQKLEQYR DSVRKHYSEL RAGIRDGLPT DLARPLCVGQ RVIAIHPKTR EIHDGSVLTV 720 DHDKCRIQFD RPELGVEFIM DIDCMPSNPF DNMPEALRRQ IGARKASFMT TEPQLNGNSS 780 FGGCEMHSSP VKANIDNLCA LAACAQPCKV MQHQAKEADI HALSELKRAL DKKETALTEL 840 RNANSGILEN QNGIECLKDS EGFKKHYATV LVELKEASGQ VSDTMLQLRQ RNTYTDNSLP 900 PWMKPRAKFE VHDDLPSVLD SSMSQESRST VIEIIKGSRL RAHAMLDAAF QAWSQATKEG 960 KDAITKIGQA LDSIDYQQLS SKYRLPVIRS QDQVNGSFYH HNQSTCRASE PLLNDASGPK 1020 LHKDSEQVDI EIPSELIASC VATLTMIQSC TERQYPPADV ARILDSAVTS LQPCDPRNLP 1080 IYREIQMCMG RIKTQILALI PS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6301 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151426 | 1e-121 | AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024638392.1 | 0.0 | protein ALWAYS EARLY 3 isoform X2 | ||||
TrEMBL | A0A2K3NNN3 | 0.0 | A0A2K3NNN3_TRIPR; Always early 2-like protein | ||||
STRING | AES61372 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6301 |