PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6286

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 391aa MW: 44285.6 Da PI: 6.7659

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6286	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.7e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LHerF+eav+qLGGs+kAtPkt+l+lm+++gLtl+h+kSHLQkYR+ Tp57577_TGAC_v2_mRNA6286 35 KPRLKWTADLHERFIEAVNQLGGSDKATPKTVLKLMGIPGLTLYHLKSHLQKYRI 89 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.818	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-30	33	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	34	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-23	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-10	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-25	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MYFHHQQQQA RNMHALRMHM QGSGDSGLVL STDAKPRLKW TADLHERFIE AVNQLGGSDK 60 ATPKTVLKLM GIPGLTLYHL KSHLQKYRIS KHGNGHANIS SSKIGAPTTE LVESRMSESS 120 GIHMKDLSIG LQTNKNSEIN EALNMQIEVQ RRLHEQLEVQ RHLQLRIEAQ GKYLQSVLEK 180 AKETLGSQNL GTMGLDAAKV QLSELASRVS TENLDTKFSE LKELNVLWPQ QTHEGEAIDY 240 SMSSFLTNSD DSQRDQEIHN KGMNFRPYNG TFCEEVKENT MFLSSSNDKV LDGSGEVPKQ 300 TSSLLSMNIG VHEEENFWRR NNSKEDLKGE EWKRRKSIET SGVQLKLNSD KISQDYRLAN 360 FEVKLDLNSH DDHDASQCQK FDLNGFSWNC *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MYFHHQQQQA RNMHALRMHM QGSGDSGLVL STDAKPRLKW TADLHERFIE AVNQLGGSDK  60
ATPKTVLKLM GIPGLTLYHL KSHLQKYRIS KHGNGHANIS SSKIGAPTTE LVESRMSESS  120
GIHMKDLSIG LQTNKNSEIN EALNMQIEVQ RRLHEQLEVQ RHLQLRIEAQ GKYLQSVLEK  180
AKETLGSQNL GTMGLDAAKV QLSELASRVS TENLDTKFSE LKELNVLWPQ QTHEGEAIDY  240
SMSSFLTNSD DSQRDQEIHN KGMNFRPYNG TFCEEVKENT MFLSSSNDKV LDGSGEVPKQ  300
TSSLLSMNIG VHEEENFWRR NNSKEDLKGE EWKRRKSIET SGVQLKLNSD KISQDYRLAN  360
FEVKLDLNSH DDHDASQCQK FDLNGFSWNC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6286

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT139585	0.0	BT139585.1 Medicago truncatula clone JCVI-FLMt-20F6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013451581.1	0.0	myb-related protein 2 isoform X2
Swissprot	Q9SQQ9	1e-111	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A072U768	0.0	A0A072U768_MEDTR; Myb-like transcription factor family protein
STRING	XP_004489714.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-113	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6286

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]