PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA626
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LSD
Protein Properties Length: 83aa    MW: 8984.7 Da    PI: 8.5756
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA626genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD145.21.5e-141539125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             C+gCr+lL YPrGA++V+CalC+t+
  Tp57577_TGAC_v2_mRNA626 15 CSGCRNLLLYPRGASNVCCALCNTI 39
                             ***********************97 PP

2zf-LSD1474.2e-155477124
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                             CggCrtlL+Y rGA+sVRC++C+t
  Tp57577_TGAC_v2_mRNA626 54 CGGCRTLLMYSRGATSVRCSCCNT 77
                             ***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.7E-141241IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-121539IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-145178IPR005735Zinc finger, LSD1-type
PfamPF069437.0E-135477IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MVESRLRAMR SHIMCSGCRN LLLYPRGASN VCCALCNTIT PVLPPGIEMS QLYCGGCRTL  60
LMYSRGATSV RCSCCNTLXX XX*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA626
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488206.14e-41protein LSD1-like
RefseqXP_027189085.14e-41protein LSD1-like
SwissprotQ93ZB12e-29LOL1_ARATH; Protein LOL1
TrEMBLA0A2K3P5292e-42A0A2K3P529_TRIPR; Protein LSD1-like
STRINGXP_004488206.11e-40(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.15e-32lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]