PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6247
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 500aa    MW: 55264.7 Da    PI: 8.6689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6247genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0587109123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA6247  87 FVCEICNKGFQRDQNLQLHRRGH 109
                               89*******************88 PP
2zf-C2H211.20.0011163185123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+ k H + +
  Tp57577_TGAC_v2_mRNA6247 163 WKCDKCSKKYAVQSDWKAHSKIC 185
                               58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-686109No hitNo description
PfamPF121717.9E-587109IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01787109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94987109IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355220128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-6158183No hitNo description
SMARTSM00355150163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSNITSCDSG SFSTENNRED GVKQTEILGQ FHSPHSHTST TNNNTNGTSN TNLQPPLKRK  60
RNLPGNPDPS AEVIALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  120
NEIIKRVYVC PEPSCVHHNP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA  180
HSKICGTREY KCDCGTIFSR RDSFITHRAF CDALAEENNK ANEGSIQLQH QQIPNLVSSL  240
LPINPPQIGA TSSEIFNTDH KHPLSSPHDL MSVPAKQFNS NIFTRSLSSS TSSPSLQLSS  300
NNSLNNILEE NGSLHLSAAT SPHMSATALL QKAAQMGATV SNNNAGMSMP EKAVAGNMMA  360
PPLFGVSQQQ GHAFMNHYMQ QQAQYNNNNF NANGIINGGG VNGSMNGVDM FNAILDQSKA  420
LSKIIEQNNQ TQGSIXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXYE HWWNSSFAPG  480
TLFRSISVAS EMEYGELSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-33159220364Zinc finger protein JACKDAW
5b3h_F6e-33159220364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6247
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1514261e-160AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence.
GenBankAC1612411e-160AC161241.18 Medicago truncatula clone mth2-193c3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638415.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-115IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A396JWU80.0A0A396JWU8_MEDTR; Putative transcription factor C2H2 family
STRINGAES613770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]