PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA6230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 146aa MW: 15889.9 Da PI: 8.0531 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00011 | 11 | 49 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Tp57577_TGAC_v2_mRNA6230 11 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 49 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.007 | 1 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.78E-7 | 9 | 53 | No hit | No description |
SuperFamily | SSF47459 | 1.05E-10 | 9 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-8 | 13 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence Send to blast |
QTTTQTTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE AIGYIRFLQS QIEALSLPYL 60 NNGSGNTRQQ HSVQGEKNCL FPEDPGQLLN ENSLKRKAVE EVSQQEPKKD LKSRGLCLVP 120 VSCTLQVGSD NGADYWAPAL GGGFQ* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6230 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT136055 | 0.0 | BT136055.1 Medicago truncatula clone JCVI-FLMt-17F9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013453115.1 | 7e-94 | transcription factor bHLH68 isoform X2 | ||||
Swissprot | Q8S3D1 | 1e-68 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | I3S6F8 | 2e-92 | I3S6F8_MEDTR; BHLH transcription factor-like protein | ||||
STRING | AES85026 | 4e-94 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29100.1 | 5e-71 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA6230 |
Publications ? help Back to Top | |||
---|---|---|---|
|