PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6161
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 466aa    MW: 52306.9 Da    PI: 6.5102
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6161genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.91e-49611862128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                               +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkat
  Tp57577_TGAC_v2_mRNA6161  61 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKAT 144
                               79***************************.89***************8778899******************************* PP

                       NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               g d+ + +++ + +glkktLvfy+g+apkg +t+W+m+eyrl
  Tp57577_TGAC_v2_mRNA6161 145 GADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 186
                               ****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5560206IPR003441NAC domain
PROSITE profilePS5100555.85860207IPR003441NAC domain
PfamPF023655.3E-2562186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAIARAVSPT MSMRMSLSHS HEDGNNNNTT TNSNDSNTKA TTVTAVVDDD DDDDHEHDLV  60
MPGFRFHPTE EELVEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWYFYV  120
PRDRKYRNGD RPNRVTTSGY WKATGADRMI RTENFRSIGL KKTLVFYSGK APKGIRTSWI  180
MNEYRLPQHE TERYQKGEIS LCRVYKRAGV EDHPSLPRCL PITRPSSARG SSHNNSDKKQ  240
NEILGMGFVV GQSSKTLVID HDDDNDDDQI LNKMDGGGSR SAGATHGNSS DHDHVTTALG  300
LSKYSPPPHN YRTEEEEQLM MMQHQQQQQQ VPRQLVQYAA AAGNSLFVPA VCGGAISTSA  360
AAASCSSNNG STASAAMMMD ELNRLVSYQQ QQQYCYNVQN NIINPPNPNP NNHHFSTLLM  420
QPMSLPNQLP AATATTFSDR LWDWNPIPED HNHPNSSNSN TTSFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-556220719165NO APICAL MERISTEM PROTEIN
1ut4_B8e-556220719165NO APICAL MERISTEM PROTEIN
1ut7_A8e-556220719165NO APICAL MERISTEM PROTEIN
1ut7_B8e-556220719165NO APICAL MERISTEM PROTEIN
4dul_A8e-556220719165NAC domain-containing protein 19
4dul_B8e-556220719165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0527200.0BT052720.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-G-1 unknown mRNA.
GenBankBT1438150.0BT143815.1 Medicago truncatula clone JCVI-FLMt-12K22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458699.10.0NAC domain-containing protein 35
TrEMBLA0A072UTQ90.0A0A072UTQ9_MEDTR; NAC transcription factor-like protein
STRINGGLYMA17G00650.21e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-110NAC domain containing protein 35