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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA6157 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
GRAS |
Protein Properties |
Length: 516aa MW: 57964.5 Da PI: 5.6941 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA6157 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 418.8 | 4.8e-128 | 142 | 513 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84
l+e+Ll cA+avs+gd a+ + + l +++s +gdp+qRl ay++e+L+arl +s+s +ykal++++ + s+e l++++++
Tp57577_TGAC_v2_mRNA6157 142 LKEVLLLCAQAVSDGDIPTARGWMDNvLVKMVSVAGDPIQRLSAYLLEGLRARLESSGSLIYKALKCEQPT---SKELLSYMHVL 223
5789******************998625677***************************************9...9********** PP
GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
++++P++kf+++ aN I ea+++e+r+HiiDf+i qG+QW+ L+qaLa+Rp+gpp +RiTgv++++s+ + l+ +ger+++
Tp57577_TGAC_v2_mRNA6157 224 YQICPYFKFAYISANAVISEAMANESRIHIIDFQIAQGTQWLLLIQALANRPGGPPFIRITGVDDSQSFhaRGGGLQIVGERISD 308
*****************************************************************9999889999********** PP
GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
+A+++gvpfef+ +a + +++ e+L++ pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++
Tp57577_TGAC_v2_mRNA6157 309 YAKSCGVPFEFHN-TAMSGCEVQRENLKIIPGEALAVNFPYFLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSP 392
*************.89999****************************************************************** PP
GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
F++rf+e+++yy+a+f+s+++ ++++++ri+ E+ +++r+ivn++aceg er+erhe ++kWr+r+++aGF++ +l+++++ ++
Tp57577_TGAC_v2_mRNA6157 393 FFHRFVETMDYYTAMFESIDVACAKDDKKRISTEQNCVARDIVNMIACEGIERVERHEVFGKWRMRFSMAGFRQCSLNSSVMHSV 477
************************************************************************************* PP
GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ ll+ ++++ yr+e+++g+l+lgW++r++ + SaWr
Tp57577_TGAC_v2_mRNA6157 478 QNLLKDYNQN-YRLEHRDGALYLGWMKRAMATSSAWR 513
********66.*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 516 aa
Download sequence Send
to blast |
MQRQFCHQSD LSFGTMKEEC FPVESYPEIA AFIDCDSPSY ASVSSNKSPF SPQDSQSQSC 60 HSDHQQSSDN TYGSPISGMS SVDDGHDLKH KLRELENSLL GSDDFDIVDS YGNCMETSLH 120 GASPSAKYDW DLIAENIQKF DLKEVLLLCA QAVSDGDIPT ARGWMDNVLV KMVSVAGDPI 180 QRLSAYLLEG LRARLESSGS LIYKALKCEQ PTSKELLSYM HVLYQICPYF KFAYISANAV 240 ISEAMANESR IHIIDFQIAQ GTQWLLLIQA LANRPGGPPF IRITGVDDSQ SFHARGGGLQ 300 IVGERISDYA KSCGVPFEFH NTAMSGCEVQ RENLKIIPGE ALAVNFPYFL HHMPDESVSI 360 ENHRDRLLRL VKSLSPKVVT LVEQESNTNT SPFFHRFVET MDYYTAMFES IDVACAKDDK 420 KRISTEQNCV ARDIVNMIAC EGIERVERHE VFGKWRMRFS MAGFRQCSLN SSVMHSVQNL 480 LKDYNQNYRL EHRDGALYLG WMKRAMATSS AWRCN*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CU570868 | 0.0 | CU570868.2 M.truncatula DNA sequence from clone MTH2-162A5 on chromosome 3, complete sequence. |