PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6157
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 516aa    MW: 57964.5 Da    PI: 5.6941
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6157genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.84.8e-1281425131374
                      GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                               l+e+Ll cA+avs+gd   a+  + + l +++s +gdp+qRl ay++e+L+arl +s+s +ykal++++ +   s+e l++++++
  Tp57577_TGAC_v2_mRNA6157 142 LKEVLLLCAQAVSDGDIPTARGWMDNvLVKMVSVAGDPIQRLSAYLLEGLRARLESSGSLIYKALKCEQPT---SKELLSYMHVL 223
                               5789******************998625677***************************************9...9********** PP

                      GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                               ++++P++kf+++ aN  I ea+++e+r+HiiDf+i qG+QW+ L+qaLa+Rp+gpp +RiTgv++++s+  +   l+ +ger+++
  Tp57577_TGAC_v2_mRNA6157 224 YQICPYFKFAYISANAVISEAMANESRIHIIDFQIAQGTQWLLLIQALANRPGGPPFIRITGVDDSQSFhaRGGGLQIVGERISD 308
                               *****************************************************************9999889999********** PP

                      GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                               +A+++gvpfef+  +a +  +++ e+L++ pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++
  Tp57577_TGAC_v2_mRNA6157 309 YAKSCGVPFEFHN-TAMSGCEVQRENLKIIPGEALAVNFPYFLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSP 392
                               *************.89999****************************************************************** PP

                      GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                               F++rf+e+++yy+a+f+s+++  ++++++ri+ E+ +++r+ivn++aceg er+erhe ++kWr+r+++aGF++ +l+++++ ++
  Tp57577_TGAC_v2_mRNA6157 393 FFHRFVETMDYYTAMFESIDVACAKDDKKRISTEQNCVARDIVNMIACEGIERVERHEVFGKWRMRFSMAGFRQCSLNSSVMHSV 477
                               ************************************************************************************* PP

                      GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               + ll+ ++++ yr+e+++g+l+lgW++r++ + SaWr
  Tp57577_TGAC_v2_mRNA6157 478 QNLLKDYNQN-YRLEHRDGALYLGWMKRAMATSSAWR 513
                               ********66.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.045116494IPR005202Transcription factor GRAS
PfamPF035141.6E-125142513IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MQRQFCHQSD LSFGTMKEEC FPVESYPEIA AFIDCDSPSY ASVSSNKSPF SPQDSQSQSC  60
HSDHQQSSDN TYGSPISGMS SVDDGHDLKH KLRELENSLL GSDDFDIVDS YGNCMETSLH  120
GASPSAKYDW DLIAENIQKF DLKEVLLLCA QAVSDGDIPT ARGWMDNVLV KMVSVAGDPI  180
QRLSAYLLEG LRARLESSGS LIYKALKCEQ PTSKELLSYM HVLYQICPYF KFAYISANAV  240
ISEAMANESR IHIIDFQIAQ GTQWLLLIQA LANRPGGPPF IRITGVDDSQ SFHARGGGLQ  300
IVGERISDYA KSCGVPFEFH NTAMSGCEVQ RENLKIIPGE ALAVNFPYFL HHMPDESVSI  360
ENHRDRLLRL VKSLSPKVVT LVEQESNTNT SPFFHRFVET MDYYTAMFES IDVACAKDDK  420
KRISTEQNCV ARDIVNMIAC EGIERVERHE VFGKWRMRFS MAGFRQCSLN SSVMHSVQNL  480
LKDYNQNYRL EHRDGALYLG WMKRAMATSS AWRCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-5917651336375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6157
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU5708680.0CU570868.2 M.truncatula DNA sequence from clone MTH2-162A5 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610571.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2K3NIF60.0A0A2K3NIF6_TRIPR; SCARECROW-like protein 13-like
STRINGAES927680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13