PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6103
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 197aa    MW: 22935.3 Da    PI: 10.9997
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6103genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1652.1e-2040124891
                      FAR1   8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                               k++GF +r+++ +ksk++g  t+r+f+C ke  r  +k+++ + +r+raetrt+C+a++++++++  gk++v +++ +H H+l+p
  Tp57577_TGAC_v2_mRNA6103  40 KKLGFGIRREYVNKSKKDGVLTSRKFTCFKEDIRGVDKSRQPTGERNRAETRTDCQARMVIRLDRkIGKYKVVDFVAKHDHPLQP 124
                               689**********************************999999********************9989***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-1740124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
LSQHHSPPSP LFVSTSTARC HPLYPFRRRR RHFHSFSKCK KLGFGIRREY VNKSKKDGVL  60
TSRKFTCFKE DIRGVDKSRQ PTGERNRAET RTDCQARMVI RLDRKIGKYK VVDFVAKHDH  120
PLQPQKYVHM IRSNRRISEA QATQIVLGDQ SGLRPKGLHE YIYISKQAGG LETMEKRENS  180
GRLQIEKREN GIDYRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629982.12e-63protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027191736.15e-62protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3NJ062e-64A0A2K3NJ06_TRIPR; Protein FAR1-related sequence 5-like
STRINGXP_004503202.13e-61(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-13FAR1-related sequence 5