PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 197aa MW: 22935.3 Da PI: 10.9997 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65 | 2.1e-20 | 40 | 124 | 8 | 91 |
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 k++GF +r+++ +ksk++g t+r+f+C ke r +k+++ + +r+raetrt+C+a++++++++ gk++v +++ +H H+l+p Tp57577_TGAC_v2_mRNA6103 40 KKLGFGIRREYVNKSKKDGVLTSRKFTCFKEDIRGVDKSRQPTGERNRAETRTDCQARMVIRLDRkIGKYKVVDFVAKHDHPLQP 124 689**********************************999999********************9989***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-17 | 40 | 124 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
LSQHHSPPSP LFVSTSTARC HPLYPFRRRR RHFHSFSKCK KLGFGIRREY VNKSKKDGVL 60 TSRKFTCFKE DIRGVDKSRQ PTGERNRAET RTDCQARMVI RLDRKIGKYK VVDFVAKHDH 120 PLQPQKYVHM IRSNRRISEA QATQIVLGDQ SGLRPKGLHE YIYISKQAGG LETMEKRENS 180 GRLQIEKREN GIDYRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6103 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024629982.1 | 2e-63 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027191736.1 | 5e-62 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3NJ06 | 2e-64 | A0A2K3NJ06_TRIPR; Protein FAR1-related sequence 5-like | ||||
STRING | XP_004503202.1 | 3e-61 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15115 | 2 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6103 |