PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 178aa MW: 20844.2 Da PI: 7.8751 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.9 | 7.1e-23 | 76 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 kfY+ +Ak+ GFsvrk + ++ r++++ ++tf Cs+eg+r+++ + ++++r+++++tr+gC ak +v+ + + kw+vt +e e Tp57577_TGAC_v2_mRNA602 76 KFYCWFAKMSGFSVRKGHVIRN-RERHVLQQTFLCSREGFRHSQGLNpEDRQRQQKNTTRCGCMAKCRVHIDIrSRKWYVTVFEFE 160 6********************9.5556****************99987888999999******99999998887************ PP FAR1 85 HnHela 90 HnHel Tp57577_TGAC_v2_mRNA602 161 HNHELL 166 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-21 | 76 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
IGXXXXXXXX XSYMSSPEHD SNSNEYGSEH DAGSYTAEED TVVIRDMADI KKISLENFHL 60 TDISKYEFAS LDVAYKFYCW FAKMSGFSVR KGHVIRNRER HVLQQTFLCS REGFRHSQGL 120 NPEDRQRQQK NTTRCGCMAK CRVHIDIRSR KWYVTVFEFE HNHELLNGTM CGFLPAYR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA602 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3KM05 | 8e-65 | A0A2K3KM05_TRIPR; FAR1 DNA-binding domain protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-16 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA602 |