PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA5925 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22884.5 Da PI: 9.8339 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.6 | 4.4e-31 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+GfrF+P d+ lv++yLk kv +++l++ ++i+e+d++++ePw Lp + + +++++yfF r+++ ++ +r++ +g W+ Tp57577_TGAC_v2_mRNA5925 17 LPVGFRFDPIDDILVNFYLKLKVYNQPLPF-HAIQEFDVFQTEPWMLPyDRNSFKDRKYYFFDIRNRRFQN--MDTRVAGNGEWR 98 79****************************.88***************54555688999****99999875..789999****** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k+ke++ ++ +g k+tLv+++ + ++ +kt+Wvmhe+r+ Tp57577_TGAC_v2_mRNA5925 99 TVEKNKELVLPSNYFIGRKNTLVYWRIQGNEVVKTQWVMHEFRI 142 **********9999****************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-31 | 12 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.82 | 17 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-16 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MAIHKYVAYD LDGCPKLPVG FRFDPIDDIL VNFYLKLKVY NQPLPFHAIQ EFDVFQTEPW 60 MLPYDRNSFK DRKYYFFDIR NRRFQNMDTR VAGNGEWRTV EKNKELVLPS NYFIGRKNTL 120 VYWRIQGNEV VKTQWVMHEF RIGTIFHPIK VTTLGAYRIF KMKVAKVEKK VNIPTMIDFT 180 MEDASSSAPP PSP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-25 | 17 | 142 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA5925 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449453.1 | 3e-81 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A2K3NF81 | 1e-138 | A0A2K3NF81_TRIPR; NAC domain-containing protein (Fragment) | ||||
STRING | XP_004492996.1 | 9e-80 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04070.2 | 6e-27 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA5925 |