PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA5921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 24678 Da PI: 9.0112 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 81 | 128 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 y+GVr ++ +g+++AeIrd + ng r+++g+f+t+e Aa a+++a+ Tp57577_TGAC_v2_mRNA5921 81 YRGVRTRP-WGKYAAEIRDTTRNG--VRVWIGTFDTPEAAALAYDQAAFLT 128 9****999.**********54465..*********************9755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.7E-28 | 80 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.272 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-32 | 80 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 80 | 139 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-11 | 81 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 81 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.40E-16 | 81 | 140 | No hit | No description |
PRINTS | PR00367 | 1.2E-9 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDFYSSADLF DISWEEMFFF NNIDSDSSSS SGEMDLQEPR YNITYNGNVK EENPPPPPLV 60 SLAPKTLNPQ PTSFKREKRL YRGVRTRPWG KYAAEIRDTT RNGVRVWIGT FDTPEAAALA 120 YDQAAFLTRG CRAILNFSEH VVKESLQNMN LKTLLNRDSS PLLELKRMHV LRTRSKTCTK 180 KAKRDSKNGV LKNAQNVLVL EDMGSEYLEQ LLMSSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-24 | 81 | 137 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-24 | 81 | 137 | 6 | 62 | ATERF1 |
3gcc_A | 1e-24 | 81 | 137 | 6 | 62 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA5921 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449887.1 | 1e-113 | ethylene-responsive transcription factor 1B | ||||
TrEMBL | A0A2K3L7G0 | 1e-137 | A0A2K3L7G0_TRIPR; Ethylene-responsive transcription factor 1b-like protein | ||||
STRING | XP_004493869.1 | 3e-84 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 4e-36 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA5921 |