PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5887
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 511aa    MW: 58444.5 Da    PI: 6.5979
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5887genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.73.6e-24124222186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 
                               +Wt+ +v++Li a+ +++++ +++             +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +
  Tp57577_TGAC_v2_mRNA5887 124 KWTDTMVRLLIMAVYYIGDEAGSEGndpskkkssgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtA 208
                               7**************9988877542366677899999**********************************************55 PP

                  trihelix  73 sessstcpyfdqle 86 
                               ++++++  ++d ++
  Tp57577_TGAC_v2_mRNA5887 209 CRVVENQNLLDTMD 222
                               9*****99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-22122247No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MMEANGMFST ITSSGLLGVI DTPLHQQQQQ QQQQQQQQQQ NLPNQQQNPH HLHHSQVVSY  60
APQEQQLHQS IKHGYPPFSS SKNKIQQQQQ QQSSQVSDED EPNFPAEESS GDPKRKISPW  120
QRMKWTDTMV RLLIMAVYYI GDEAGSEGND PSKKKSSGLL QKKGKWKSVS RAMMEKGFYV  180
SPQQCEDKFN DLNKRYKRVN DILGKGTACR VVENQNLLDT MDLTPKMKDE VRKLLNSKHL  240
FFREMCAYHN SCGHGGAGAG AGASGSNVHH QLEGVTTTTT TPPQNQPQHH QQQQQQQHCF  300
HSSENGVGNL GGSRGEGLRM LKIGSGDVEE EDDEDEDDES EDYSDEDEEE SGEGGSKGHQ  360
LISHLNDQDD EENDGKSSRK RPRKGGFSFS ISPSSTSLTL MHQMNNEISG VFQDGGKSPW  420
EKKQWIRTRI LQLEEQKVRY ESQAFELEKQ RLKWQRYSSK KEREMERAKL ENERRRLENE  480
RMVLLIRKKE IELMNLQQQQ QQQQQQHSST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5887
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1395250.0AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence.
GenBankAC1467880.0AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590397.10.0GATA zinc finger domain-containing protein 10
TrEMBLA0A2K3NHP00.0A0A2K3NHP0_TRIPR; Mediator of RNA polymerase II transcription subunit 26-like protein
STRINGAES606480.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-67sequence-specific DNA binding transcription factors