PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5866

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 276aa MW: 31416.5 Da PI: 7.3203

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5866	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.5	9.8e-20	115	202	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ + +L+ea++e+ +l+rg+l++ +Weev++++ r + ++s +qCk+k +nl+kryk ++++++++ + s+s++p+++ Tp57577_TGAC_v2_mRNA5866 115 EWSDTAIVCLLEAYTEKFAQLNRGNLRGRDWEEVASVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMNNG-CISTSHWPWYK 198 5***********************************666677899*********************8.99999** PP trihelix 84 qlea 87 q+e+ Tp57577_TGAC_v2_mRNA5866 199 QMEH 202 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-20	113	203	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MASCDDDDDF SILRDDSHHS HHLHQTFAPH HHHHNHQTHH HFSTASVHSK PIADDDTDEY 60 GNPFDDDAGS EKRKDRDEIG DATTSYAFNK RPKPVSSGSG GVGAVGAEYR KDREEWSDTA 120 IVCLLEAYTE KFAQLNRGNL RGRDWEEVAS VVSERCENQS KSVEQCKNKV DNLKKRYKLE 180 RHRMNNGCIS TSHWPWYKQM EHIVGNSLPS KFADDDKAIV PASISPRQSK RYGVATSSSG 240 GQVNSLKSKA LPNLRWRXXX XXXXXSTYWI RYLQY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5866

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497592.1	1e-156	uncharacterized protein LOC101509939
TrEMBL	A0A2K3NPF1	0.0	A0A2K3NPF1_TRIPR; Uridylate kinase
STRING	XP_004497592.1	1e-156	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4062	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	7e-69	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5866