PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5845

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 428aa MW: 49315.3 Da PI: 6.5961

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5845	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.7	9e-30	56	141	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r+ + +++++f+q Tp57577_TGAC_v2_mRNA5845 56 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRH--DGKHYRFFRQ 138 8*********************************998***************************985..5557**** PP trihelix 85 lea 87 lea Tp57577_TGAC_v2_mRNA5845 139 LEA 141 *85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.131	49	114	IPR017877	Myb-like domain
CDD	cd12203	1.29E-19	56	121	No hit	No description
Pfam	PF13837	6.9E-20	56	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MMLSRGVVLE DFSNITTTAQ HHHVIPPPTT TTTTASASVS TPETIGCIGG DASTGRWPRQ 60 ETLTLLEIRS RLDPKFKEAN QKGPLWDEVS RIMCEEHGYQ RSGKKCREKF ENLYKYYKKT 120 KEGKAGRHDG KHYRFFRQLE ALYGENSNQT SLPETNFVSF NNFQNPSKNT NQDNNSLSLT 180 NSTDFDTSSS DDENDEKGKR KSSGRRSWKV KIKDFIDSQM KKLVEKQEDW LSKLVKTLEE 240 KENERVLREE EWRKQEVKRV EKEQKFWSKE RAWIEARDAA LMEALKNIGG REMKVENEAH 300 DHHKDINVIN EAEIHQNNFE NQNEDGSEIL NSNVRGDSSK EGNKKRKENF YFNNNEQCSM 360 YNQGSSYCDD QREEIVKLQR NDHGSSPSDS NVGNVANGDT CYPFLLNEGG NLWENFGLKI 420 NKSNQNL*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MMLSRGVVLE DFSNITTTAQ HHHVIPPPTT TTTTASASVS TPETIGCIGG DASTGRWPRQ  60
ETLTLLEIRS RLDPKFKEAN QKGPLWDEVS RIMCEEHGYQ RSGKKCREKF ENLYKYYKKT  120
KEGKAGRHDG KHYRFFRQLE ALYGENSNQT SLPETNFVSF NNFQNPSKNT NQDNNSLSLT  180
NSTDFDTSSS DDENDEKGKR KSSGRRSWKV KIKDFIDSQM KKLVEKQEDW LSKLVKTLEE  240
KENERVLREE EWRKQEVKRV EKEQKFWSKE RAWIEARDAA LMEALKNIGG REMKVENEAH  300
DHHKDINVIN EAEIHQNNFE NQNEDGSEIL NSNVRGDSSK EGNKKRKENF YFNNNEQCSM  360
YNQGSSYCDD QREEIVKLQR NDHGSSPSDS NVGNVANGDT CYPFLLNEGG NLWENFGLKI  420
NKSNQNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5845

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-52	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013468051.1	0.0	trihelix transcription factor PTL
Swissprot	Q9LZS0	2e-95	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2K3P099	0.0	A0A2K3P099_TRIPR; Trihelix transcription factor GT-2-like protein
STRING	XP_004497606.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	7e-78	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5845

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]