PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5830

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 646aa MW: 73040.2 Da PI: 5.8324

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5830	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362.9	4.5e-111	277	642	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + L++cA+av+s d++++++lL+++++++s+ gd +qRla+yf+++L+ rl+ ++ + ++ + + + l+a+klf Tp57577_TGAC_v2_mRNA5830 277 TMLTQCAQAVASYDQRNTNELLKQIRQHSSQFGDGLQRLAHYFANGLEIRLSA------ETPSYKPLDMATAGDMLKAYKLFITS 355 579***********************************************9......444444444445789******* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 sP+ ++++++ ++I + ve+e+ vHiiDf+i +G+QWp+L+++L+ Rp+gpp+lRiTg++ p++g +e++eetg+rL+++++ Tp57577_TGAC_v2_mRNA5830 356 SPLQRLTNMLLTKTIFRLVENESSVHIIDFGICYGFQWPCLIKKLSLRPGGPPKLRITGIDLPRAGfrPAERVEETGRRLENYCK 440 ************************************************************99*************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +++vpfe+n +a+++e++++e+L+++++E ++V++ ++l++l+de+v+ + +r+++Lkl+++++Pk++ + + +++++ Fl+ Tp57577_TGAC_v2_mRNA5830 441 KFDVPFEYNC-IAHKWETIRIEDLKIDRNEITVVSCLYRLKNLPDETVAANCPREALLKLIRKINPKIFFHGVVNGSYSAPFFLT 524 ******.799******************************************************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 rf eal+++s+lfd++ea++pre+ +r ++E+el+gr++ nv+acegaer+er et+++W+ r ++aGF++++++++ +++ k + Tp57577_TGAC_v2_mRNA5830 525 RFREALYHFSSLFDMFEANVPREDTQRLMLEKELFGRDAINVIACEGAERVERPETYKQWQLRNRRAGFRQIRFDSDLVNETKVM 609 ********************************************************************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ + + + v+e+ ++++lgWk+r L ++SaW Tp57577_TGAC_v2_mRNA5830 610 VKREYHKDFAVDEDGKWVLLGWKGRVLNALSAW 642 *888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.288	249	623	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-108	277	642	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MLSPNAFLQD FCVPDTVNPV TNGFELEDSS SSPSSVTSSN GESSKGTRYS NYILGYISDI 60 LMDEEDDLEL KPCMLQECLR LQAAEKSFYD VLGHNYPNSS CEDTTNTDGN FSRGTASFES 120 NSSSCSTDNS YESDWVNHAG EFDCSSLQLQ THVVEQNNFN VTEAANGIHN GCWNAIQPGM 180 VEEISTSVVP REKRSHKMNG DDTWNEQEGR GSKLSAIFSD ELEPPEILEE VLLCQAGRTQ 240 NQQASHNVNS GGKAKRTGSR SKKVSTTNNA PAVDLWTMLT QCAQAVASYD QRNTNELLKQ 300 IRQHSSQFGD GLQRLAHYFA NGLEIRLSAE TPSYKPLDMA TAGDMLKAYK LFITSSPLQR 360 LTNMLLTKTI FRLVENESSV HIIDFGICYG FQWPCLIKKL SLRPGGPPKL RITGIDLPRA 420 GFRPAERVEE TGRRLENYCK KFDVPFEYNC IAHKWETIRI EDLKIDRNEI TVVSCLYRLK 480 NLPDETVAAN CPREALLKLI RKINPKIFFH GVVNGSYSAP FFLTRFREAL YHFSSLFDMF 540 EANVPREDTQ RLMLEKELFG RDAINVIACE GAERVERPET YKQWQLRNRR AGFRQIRFDS 600 DLVNETKVMV KREYHKDFAV DEDGKWVLLG WKGRVLNALS AWVPT*

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MLSPNAFLQD FCVPDTVNPV TNGFELEDSS SSPSSVTSSN GESSKGTRYS NYILGYISDI  60
LMDEEDDLEL KPCMLQECLR LQAAEKSFYD VLGHNYPNSS CEDTTNTDGN FSRGTASFES  120
NSSSCSTDNS YESDWVNHAG EFDCSSLQLQ THVVEQNNFN VTEAANGIHN GCWNAIQPGM  180
VEEISTSVVP REKRSHKMNG DDTWNEQEGR GSKLSAIFSD ELEPPEILEE VLLCQAGRTQ  240
NQQASHNVNS GGKAKRTGSR SKKVSTTNNA PAVDLWTMLT QCAQAVASYD QRNTNELLKQ  300
IRQHSSQFGD GLQRLAHYFA NGLEIRLSAE TPSYKPLDMA TAGDMLKAYK LFITSSPLQR  360
LTNMLLTKTI FRLVENESSV HIIDFGICYG FQWPCLIKKL SLRPGGPPKL RITGIDLPRA  420
GFRPAERVEE TGRRLENYCK KFDVPFEYNC IAHKWETIRI EDLKIDRNEI TVVSCLYRLK  480
NLPDETVAAN CPREALLKLI RKINPKIFFH GVVNGSYSAP FFLTRFREAL YHFSSLFDMF  540
EANVPREDTQ RLMLEKELFG RDAINVIACE GAERVERPET YKQWQLRNRR AGFRQIRFDS  600
DLVNETKVMV KREYHKDFAV DEDGKWVLLG WKGRVLNALS AWVPT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-47	281	644	24	379	Protein SCARECROW
5b3h_D	4e-47	281	644	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013465416.1	0.0	scarecrow-like protein 30
TrEMBL	A0A072VCY3	0.0	A0A072VCY3_MEDTR; GRAS family transcription factor
STRING	AES67628	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-158	GRAS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5830