PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5761
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 751aa    MW: 85125 Da    PI: 5.509
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5761genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.76e-1153757471373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL+ cA+avs++d++ a++lL+++++++s  gd+ qRla+yf++AL+ar+++ + ++  +l +s++   + ++ l+a+++f 
  Tp57577_TGAC_v2_mRNA5761 375 LRTLLVLCAQAVSASDNRTANELLKQIRQHSSHLGDASQRLAHYFANALEARMVGAGAGTQ-ILYMSQK-MFSAADFLKAYQVFI 457
                               5789***************************************************665555.3333333.35699********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                v+P+ k++h+ aN++Il+ +e+++++HiiDf+i +G+QWp L++ L++R +gpp+lRiTg++ p++g   +e++eetg+rLa++
  Tp57577_TGAC_v2_mRNA5761 458 SVCPFKKIAHFFANKMILKTAEKAKTLHIIDFGILYGFQWPILIKFLSKRVGGPPKLRITGIEYPQAGfrPAERIEETGRRLANY 542
                               *******************************************************************9***************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               +++++v+fe++++ ++++e++++e+L++k++E++aVn+ l+ ++l+de+ +++s++d+vLkl+++++P +++ +  +  +n++ F
  Tp57577_TGAC_v2_mRNA5761 543 CQRFNVSFEYKAIPSRHWETIQIEDLNIKSDEVVAVNCLLRFKNLHDETIEVNSPKDAVLKLIRKINPSIFIQSIVNGTYNAPFF 627
                               ************9999********************************************************************* PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                                +rf e+l +ysa++d++++ + re+e+r ++Ere+lgrei+nvvaceg er+er et+++W+ r  +aGF+++pl+++++++ +
  Tp57577_TGAC_v2_mRNA5761 628 STRFKESLFHYSAMYDMYDTLICRENEWRLTIEREFLGREIMNVVACEGLERVERPETYKQWKVRNLRAGFRQLPLDKDIMDNFR 712
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 lr  + + +  +e+++++++gWk+r L++  +W
  Tp57577_TGAC_v2_mRNA5761 713 GKLRAWYHKDFVFDEDNNWMLQGWKGRILYASACW 747
                               *******888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.957349728IPR005202Transcription factor GRAS
PfamPF035142.1E-112375747IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MDPNFLGFET TFEIDDYGNI QLLSDQNPTT NDPYFYPPPY MDPPPPSYSN SLFNSEEEPL  60
VSTDPSFEDT DFSETVKYIS QILMEEDFQQ KPCMCYDPIT LQHTEKIFFD ALESKSPLLS  120
PNQHPLDFLQ IPNGNSSATD SGNSSCSNEL LKPLSPDTPV SGSTDSGFSS ISSVKFDQFI  180
VPKHGLNNNN NNDNSISDGV LDLDSSETKV LAQNIFSDVD SMLQFRKGLE EASKFLPQKP  240
QLFTGLENIS NSLVSQESKG RVEVIKMEGS DRENSNSSYS INSSSRGLLK SRKNHERQSS  300
EDEEGRSNKQ SAVCVEESEI TEMFDRVLLS VENVPLCAEN KDGSVVDSSG KVGEPDGRGK  360
ARSKKPGKKR ETVDLRTLLV LCAQAVSASD NRTANELLKQ IRQHSSHLGD ASQRLAHYFA  420
NALEARMVGA GAGTQILYMS QKMFSAADFL KAYQVFISVC PFKKIAHFFA NKMILKTAEK  480
AKTLHIIDFG ILYGFQWPIL IKFLSKRVGG PPKLRITGIE YPQAGFRPAE RIEETGRRLA  540
NYCQRFNVSF EYKAIPSRHW ETIQIEDLNI KSDEVVAVNC LLRFKNLHDE TIEVNSPKDA  600
VLKLIRKINP SIFIQSIVNG TYNAPFFSTR FKESLFHYSA MYDMYDTLIC RENEWRLTIE  660
REFLGREIMN VVACEGLERV ERPETYKQWK VRNLRAGFRQ LPLDKDIMDN FRGKLRAWYH  720
KDFVFDEDNN WMLQGWKGRI LYASACWVPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4938274925379Protein SCARECROW
5b3h_D3e-4938274925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5761
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597373.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K3NBT90.0A0A2K3NBT9_TRIPR; SCARECROW-like protein 14-like
STRINGAES676240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]