PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA5629 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 504aa MW: 55093.1 Da PI: 8.4298 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.7 | 1e-11 | 151 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Tp57577_TGAC_v2_mRNA5629 151 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 207 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.3 | 5.2e-15 | 250 | 301 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Tp57577_TGAC_v2_mRNA5629 250 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 301 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.73E-15 | 151 | 217 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-9 | 151 | 207 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.62E-19 | 151 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-12 | 152 | 216 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-23 | 152 | 221 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 152 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 153 | 164 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.83E-25 | 250 | 311 | No hit | No description |
Pfam | PF00847 | 6.4E-10 | 250 | 301 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 250 | 311 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-18 | 251 | 310 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 251 | 315 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 251 | 309 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 291 | 311 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MDSSSSSPPT NTNNTSLAFS LSNTIIPSHS SSSSLFHSFT TFPSSTPQPL TLTGSNAVNT 60 SPDATDGGTT NLSIFTGGHK FEDFLGSTVT TTTATTCAPT QLHQFSTDLY DSELKKTISA 120 CFQGGYPAEP NSEPRKLSPK KTVDNFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS 180 RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPISNYE KELDDMKNMT RQEFVASLRR 240 KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR 300 GLNAVTNFDM SRYDVKSIAN SSLPIGGLSN KNNKISTDSS VSEIKRLEPI QSDERDHPSS 360 VSSTTTLSFA IPIKQDPSSD YWSNILGFHN TSNNNNNSSV VTTTPFNMDF STHASDNHDA 420 TFFSGSGILN VHQQNGNGNN SSSSASSSTS NSIPYATPIF SLNSNSNSNS SYDQNGNNWI 480 GHTIFQTHAK QPSLFQTPIF GME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA5629 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610101.2 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-148 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A2K3PFN5 | 0.0 | A0A2K3PFN5_TRIPR; Ap2-like ethylene-responsive transcription factor ail5-like protein | ||||
STRING | AES92298 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-137 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA5629 |
Publications ? help Back to Top | |||
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