PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA548
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 298aa    MW: 34451.1 Da    PI: 9.384
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA548genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.4e-221764249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             + +n+s  qvtfskRr g++KKA+EL++LC+++va+++fs++gk + +
  Tp57577_TGAC_v2_mRNA548 17 KMSNESHLQVTFSKRRSGLFKKASELCTLCGVDVALVVFSPSGKAFSF 64
                             679****************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.362868IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-33867IPR002100Transcription factor, MADS-box
CDDcd002654.33E-34977No hitNo description
SuperFamilySSF554551.31E-27987IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-191030IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSSERKGKGR QRIQMKKMSN ESHLQVTFSK RRSGLFKKAS ELCTLCGVDV ALVVFSPSGK  60
AFSFGHPNID TVIDRYLSRV PLQPTTTMQF IEAHRNANLC ELNAQLTEIN NMLDNEKKRS  120
DELSLLRKVT EAQFWWACPI DGMNRAELEF LKKALEELKK LVAQHVNELA XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXFCSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-14993186Myocyte-specific enhancer factor 2A
3kov_B2e-14993186Myocyte-specific enhancer factor 2A
3kov_I2e-14993186Myocyte-specific enhancer factor 2A
3kov_J2e-14993186Myocyte-specific enhancer factor 2A
3p57_A2e-14993186Myocyte-specific enhancer factor 2A
3p57_B2e-14993186Myocyte-specific enhancer factor 2A
3p57_C2e-14993186Myocyte-specific enhancer factor 2A
3p57_D2e-14993186Myocyte-specific enhancer factor 2A
3p57_I2e-14993186Myocyte-specific enhancer factor 2A
3p57_J2e-14993186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628107.13e-93agamous-like MADS-box protein AGL62
RefseqXP_004496799.13e-93agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-53AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K3LJJ61e-107A0A2K3LJJ6_TRIPR; MADS-box transcription factor
STRINGXP_004496799.11e-92(Cicer arietinum)
STRINGAET025831e-92(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-50AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]