PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5475
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CO-like
Protein Properties Length: 409aa    MW: 45331.9 Da    PI: 5.945
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5475genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248e-081556338
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                              ++ C+ ++   + lfC++++ +lC +C + +H+       H+
  Tp57577_TGAC_v2_mRNA5475 15 PKLCDSCKITSAALFCRSDSAFLCINCDSRIHSAnklssrHE 56
                              578******99*********************6566666676 PP
2zf-B_box25.92e-0858101340
                  zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                                ++C+ +e+ +++  C+ +   lC +C + +H+       H++v
  Tp57577_TGAC_v2_mRNA5475  58 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplarrHERV 101
                               689*****************************657777778765 PP
3CCT69.58.4e-24291334144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Tp57577_TGAC_v2_mRNA5475 291 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 334
                               9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4091360IPR000315B-box-type zinc finger
SMARTSM003363.4E-131360IPR000315B-box-type zinc finger
PfamPF006433.0E-61557IPR000315B-box-type zinc finger
CDDcd000211.61E-71760No hitNo description
PROSITE profilePS5011910.33856103IPR000315B-box-type zinc finger
PfamPF006432.4E-658101IPR000315B-box-type zinc finger
CDDcd000211.23E-859101No hitNo description
SMARTSM003368.8E-961103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787291333IPR010402CCT domain
PfamPF062036.5E-18291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGLKSFRTSN WSVPPKLCDS CKITSAALFC RSDSAFLCIN CDSRIHSANK LSSRHERVWM  60
CEVCEQAPAS VTCKADAAAL CVTCDSDIHS ANPLARRHER VXXXXXXXSP PAAAAAAASF  120
NFVVPTDDGY GQDDVETAAA WLIPNPNFGS KLAETPDIKT REMFFSDMDP FLDFDYSNNF  180
QNNNCSNGLN DSVVPVQTKP IPVPIMNHNS EGCFDIDFCR SKLSSFNYPS HSISHSVSSS  240
SLDVGVVPDG NTVSELSYTF GGGSESSGIV SGGVNSNQGV QGATQLCGMD REARVLRYRE  300
KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTEIDSDV DRFYNPTDPL TVPGSLLMDS  360
QMEYGTWNME DADDDDDDDE DLSGVKKRRC YYFYLLRLKK KNFMGLFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5475
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1271691e-118AC127169.13 Medicago truncatula chromosome 8 clone mth2-36n3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610187.10.0zinc finger protein CONSTANS-LIKE 5 isoform X2
RefseqXP_004507812.10.0zinc finger protein CONSTANS-LIKE 5 isoform X1
SwissprotQ9FHH81e-103COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2K3N2C50.0A0A2K3N2C5_TRIPR; Zinc finger protein CONSTANS-like 5-like
STRINGXP_004507812.10.0(Cicer arietinum)
STRINGAES923840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-95CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]