PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5358
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 718aa    MW: 84454.1 Da    PI: 8.329
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5358genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.49.9e-2351136191
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY++YAk vGF +++++s++sk ++++++ t+ C+++gk++e+  +     ++r+  +++C+a+l++k++ dg+w v+++ ++H
  Tp57577_TGAC_v2_mRNA5358  51 SFYRDYAKVVGFGISTKHSRRSKASRQFIDVTYACTRYGKQRESIAQ-----NPRPCLKVECEASLRIKRNCDGNWIVHNFIKHH 130
                               5******************************************9887.....9******************************** PP

                      FAR1  86 nHelap 91 
                               nHel+p
  Tp57577_TGAC_v2_mRNA5358 131 NHELFP 136
                               ****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2051136IPR004330FAR1 DNA binding domain
PfamPF105512.3E-34256349IPR018289MULE transposase domain
PROSITE profilePS509669.47536572IPR007527Zinc finger, SWIM-type
PfamPF044344.0E-6540571IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-5547574IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MEVDGNGEHV VDGIEEQAFN ETVDNDSCAV EVNDKEPYTG MKFGSQENAH SFYRDYAKVV  60
GFGISTKHSR RSKASRQFID VTYACTRYGK QRESIAQNPR PCLKVECEAS LRIKRNCDGN  120
WIVHNFIKHH NHELFPGYAH YFPCHRGINK AQKHCIENWQ HAGVRTSQIY DAMAKQHGGY  180
ENIGCLEKDI RNHLDKGRRL ALESGDANAM LECFMHMQEE NPKFFYAIDL DDEDRIKNVF  240
WVDAKGRDDY QEFGDVISFD TTYITNKYKM PFAPFIGVNN HFQSRLLGCA LLSDESTHTF  300
TWLMKTWLRA MGGKPPNAII TDQDRAMKAY IKEVFPNTRH RFCLWHILRK VPEKLSHVLS  360
KHRDFMIYLN ICIYKSWSKQ QFEDSWHEMV EKFQLSRDVW IHSLYEEREH WVPVYMKDTF  420
FGGMSTTQRS ESINSFFDKY VCKKTTLREF VEKYKVALQD REEAEMQADF NTWHKQPVLR  480
TPSPFEKQMS MIYTHEVFKK FQVEILGLSG CRIVKEHKDN QVTTFKIFDF QKNEEFIVEC  540
DVSKEEISCI CHLFEYNGYL CRHSLMALQA VGVFAVPPHY ILRRWTKDVR SKHHKRKKKD  600
VCSSKERYDH LYENAIELLE EGSLSFESYD FACHALEEAV KQCVTINQSL KIDKEKVSHN  660
NLHEKPLRDP QEKKTKGAPR RIKSGIEKGR KRTSNDKKKK VRRFPLYQNF YNDLILT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636633.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2K3NBU00.0A0A2K3NBU0_TRIPR; Protein far-red impaired response 1-like (Fragment)
STRINGAES761240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein