PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA5358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 718aa MW: 84454.1 Da PI: 8.329 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.4 | 9.9e-23 | 51 | 136 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YAk vGF +++++s++sk ++++++ t+ C+++gk++e+ + ++r+ +++C+a+l++k++ dg+w v+++ ++H Tp57577_TGAC_v2_mRNA5358 51 SFYRDYAKVVGFGISTKHSRRSKASRQFIDVTYACTRYGKQRESIAQ-----NPRPCLKVECEASLRIKRNCDGNWIVHNFIKHH 130 5******************************************9887.....9******************************** PP FAR1 86 nHelap 91 nHel+p Tp57577_TGAC_v2_mRNA5358 131 NHELFP 136 ****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-20 | 51 | 136 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-34 | 256 | 349 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.47 | 536 | 572 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.0E-6 | 540 | 571 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.9E-5 | 547 | 574 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MEVDGNGEHV VDGIEEQAFN ETVDNDSCAV EVNDKEPYTG MKFGSQENAH SFYRDYAKVV 60 GFGISTKHSR RSKASRQFID VTYACTRYGK QRESIAQNPR PCLKVECEAS LRIKRNCDGN 120 WIVHNFIKHH NHELFPGYAH YFPCHRGINK AQKHCIENWQ HAGVRTSQIY DAMAKQHGGY 180 ENIGCLEKDI RNHLDKGRRL ALESGDANAM LECFMHMQEE NPKFFYAIDL DDEDRIKNVF 240 WVDAKGRDDY QEFGDVISFD TTYITNKYKM PFAPFIGVNN HFQSRLLGCA LLSDESTHTF 300 TWLMKTWLRA MGGKPPNAII TDQDRAMKAY IKEVFPNTRH RFCLWHILRK VPEKLSHVLS 360 KHRDFMIYLN ICIYKSWSKQ QFEDSWHEMV EKFQLSRDVW IHSLYEEREH WVPVYMKDTF 420 FGGMSTTQRS ESINSFFDKY VCKKTTLREF VEKYKVALQD REEAEMQADF NTWHKQPVLR 480 TPSPFEKQMS MIYTHEVFKK FQVEILGLSG CRIVKEHKDN QVTTFKIFDF QKNEEFIVEC 540 DVSKEEISCI CHLFEYNGYL CRHSLMALQA VGVFAVPPHY ILRRWTKDVR SKHHKRKKKD 600 VCSSKERYDH LYENAIELLE EGSLSFESYD FACHALEEAV KQCVTINQSL KIDKEKVSHN 660 NLHEKPLRDP QEKKTKGAPR RIKSGIEKGR KRTSNDKKKK VRRFPLYQNF YNDLILT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA5358 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636633.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A2K3NBU0 | 0.0 | A0A2K3NBU0_TRIPR; Protein far-red impaired response 1-like (Fragment) | ||||
STRING | AES76124 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA5358 |