PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5331
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 630aa    MW: 72760.3 Da    PI: 6.8559
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5331genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.84.1e-19103197190
                      FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtk 80 
                               +fY +Y+k  GFsvrks  kk+     ++ it++ fvCs++g r +++ +  +++r++r  trt+C+a+++v+ +  +g++ v+ 
  Tp57577_TGAC_v2_mRNA5331 103 EFYYQYGKCKGFSVRKSDDKKKigpGGSKIITNKLFVCSRQGLRVKRHISrLHRKREHRCLTRTKCTARFRVTYKAdKGRFLVSV 187
                               6********************999888899**************99987757889999***************9999******** PP

                      FAR1  81 leleHnHela 90 
                               +e+ HnHel+
  Tp57577_TGAC_v2_mRNA5331 188 FEETHNHELT 197
                               ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-17103197IPR004330FAR1 DNA binding domain
PfamPF105517.7E-13320366IPR018289MULE transposase domain
PROSITE profilePS5096610.039503539IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-5514541IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MVEYDEYVYV DSNEFSSTDS HTSDDEDSSY SVSSVHDRSD DGDHTGDHDD DDDDDDDGDD  60
DDDGNDHDFD DEAFVGERAV RINSMTADEI RAMDFGSVEE AYEFYYQYGK CKGFSVRKSD  120
DKKKIGPGGS KIITNKLFVC SRQGLRVKRH ISRLHRKREH RCLTRTKCTA RFRVTYKADK  180
GRFLVSVFEE THNHELTSAR FVHLHPIYCK ISEADRAQVD GMQSRGIRTC HIMGYMVAQK  240
GGYGGVRFTK KDLYNYFDKK MRDIVKDGDV AASLHYLNAK SAIDPMLYAE YVADSSNGRM  300
KSLFWADGTS RSDYFCFAYV VAFDTTYKKN KYNLPLVIFS GCNHHSRTII FGAALVSNET  360
TETYKEAIKE VFPDSTHRLC VWHLNKNAGE NVKNSGFLKG FKKVMFLKFS KDDFEEFWSE  420
MIKALRGYRK NELVEDFKSK FSEPVLTTQL HLIESYAAKI YTAEIFKEVK EEIMKAGELI  480
VKHKKEIGDT KFYTLTKYCR DVYERTVVYD GDTFQCSCRL FDSRGFPCSH IFHVMEEEHV  540
DHIPSTLVLS RWTKDAKIDY LNMVDVNDPV DSDVIELARX XXXXXXXXXL LVILSRFRVK  600
VLQRKKKNDT KALRHCTHCK STTHNARTCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5331
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.11e-168protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3LXK30.0A0A2K3LXK3_TRIPR; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-44FAR1-related sequence 5