PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA5331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 630aa MW: 72760.3 Da PI: 6.8559 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.8 | 4.1e-19 | 103 | 197 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtk 80 +fY +Y+k GFsvrks kk+ ++ it++ fvCs++g r +++ + +++r++r trt+C+a+++v+ + +g++ v+ Tp57577_TGAC_v2_mRNA5331 103 EFYYQYGKCKGFSVRKSDDKKKigpGGSKIITNKLFVCSRQGLRVKRHISrLHRKREHRCLTRTKCTARFRVTYKAdKGRFLVSV 187 6********************999888899**************99987757889999***************9999******** PP FAR1 81 leleHnHela 90 +e+ HnHel+ Tp57577_TGAC_v2_mRNA5331 188 FEETHNHELT 197 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.4E-17 | 103 | 197 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.7E-13 | 320 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.039 | 503 | 539 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-5 | 514 | 541 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MVEYDEYVYV DSNEFSSTDS HTSDDEDSSY SVSSVHDRSD DGDHTGDHDD DDDDDDDGDD 60 DDDGNDHDFD DEAFVGERAV RINSMTADEI RAMDFGSVEE AYEFYYQYGK CKGFSVRKSD 120 DKKKIGPGGS KIITNKLFVC SRQGLRVKRH ISRLHRKREH RCLTRTKCTA RFRVTYKADK 180 GRFLVSVFEE THNHELTSAR FVHLHPIYCK ISEADRAQVD GMQSRGIRTC HIMGYMVAQK 240 GGYGGVRFTK KDLYNYFDKK MRDIVKDGDV AASLHYLNAK SAIDPMLYAE YVADSSNGRM 300 KSLFWADGTS RSDYFCFAYV VAFDTTYKKN KYNLPLVIFS GCNHHSRTII FGAALVSNET 360 TETYKEAIKE VFPDSTHRLC VWHLNKNAGE NVKNSGFLKG FKKVMFLKFS KDDFEEFWSE 420 MIKALRGYRK NELVEDFKSK FSEPVLTTQL HLIESYAAKI YTAEIFKEVK EEIMKAGELI 480 VKHKKEIGDT KFYTLTKYCR DVYERTVVYD GDTFQCSCRL FDSRGFPCSH IFHVMEEEHV 540 DHIPSTLVLS RWTKDAKIDY LNMVDVNDPV DSDVIELARX XXXXXXXXXL LVILSRFRVK 600 VLQRKKKNDT KALRHCTHCK STTHNARTCS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA5331 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126074.1 | 1e-168 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3LXK3 | 0.0 | A0A2K3LXK3_TRIPR; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-44 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA5331 |