PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5309

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 320aa MW: 35745.2 Da PI: 5.7298

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5309	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.3	2.5e-16	249	295	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k+++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ke e Tp57577_TGAC_v2_mRNA5309 249 KKQKRMIKNRESAARSRARKQAYTTELEVKVSRLEEENEKLRKEKEL 295 99****************************************99654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.5E-15	238	294	No hit	No description
SMART	SM00338	3.2E-9	245	302	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.507	247	292	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.44E-11	249	296	No hit	No description
CDD	cd14707	6.03E-21	249	295	No hit	No description
Pfam	PF00170	2.0E-14	249	294	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	252	267	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGSQVVGDNN ENHSEFQPLA RQNSMYNLTL DEVESQLGDL GKPLSSMNLD ELLKSVWTVE 60 TNQSICMENE NVAQNEQVVF QHQPNLSLNS ALSKKTVDEV WRDIQQNKGE REMNSQERQS 120 TLGEMTLEDF LVEAGVVSVA SSNRRNTNDL KVGVVDSNVP LPQFAPHGPW IQYAQPHFQH 180 PQPSVVAAYV PGQIIAQPLH MAAGAPLDVV QYADGQVAMA APMMGNLSDE KKSARKRGPD 240 DMVERTVEKK QKRMIKNRES AARSRARKQA YTTELEVKVS RLEEENEKLR KEKELVNMLA 300 NAPPPEPKCQ LRRVSSATF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5309

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003598354.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-78	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2K3NNY8	0.0	A0A2K3NNY8_TRIPR; Abscisic acid-insensitive 5-like protein
STRING	AES68605	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-69	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5309

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]