PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5199
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 934aa    MW: 105929 Da    PI: 6.6078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5199genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.56.7e-915759323374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               ++L++ Ae +++g+  +aq +Larl+++ sp g+p+ R+ +y++eAL+  l++++++       ++ s+ + + ++ a+k fse+
  Tp57577_TGAC_v2_mRNA5199 575 DQLYKTAELIEAGNPVQAQGILARLNHQLSPIGKPFLRASFYVKEALQLMLHSNGNN------LNAFSPISFIFKIGAYKSFSEI 653
                               689**************************************************4444......4444445589************ PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP+l+f+++t+Nq + ea+e+ +r+Hi+Dfdi+ G+QW +++q+L  R +g psl+iT+v+sp+s ++ el+ t+++L+++A+ l
  Tp57577_TGAC_v2_mRNA5199 654 SPVLQFANFTCNQVLIEALERFDRIHIVDFDIGFGVQWSSFMQELVLRGNGIPSLKITAVVSPSSCNEIELNFTQDNLSQYAKDL 738
                               ************************************************************************************* PP

                      GRAS 173 gvpfefnvlvakrledleleeL....r.vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                               ++pfef++l ++ l++    ++    + ++++Ea+ Vn+ ++ +  +      +s  +  L++vk+l+Pkvvv  ++ +d+ + +
  Tp57577_TGAC_v2_mRNA5199 739 NMPFEFRILNMEFLNSP---SFpqpaHfFDSNEAIGVNFPVSSFIGY------PSSFPLALHFVKQLRPKVVVTLDKICDRFDVP 814
                               ********955544443...33222231555*********9766655......4445669************************* PP

                      GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                               + + +++ l++ys+l++sl+a    + +  +k+Er++++++i ++v   + +    he+l  Wr+++ ++GF+p ++s+++++qa
  Tp57577_TGAC_v2_mRNA5199 815 LPTNVVHVLQCYSSLLESLDAV-NVNLDVLQKIERHFIQPNINKIVLGHHHR---SHEKLPPWRNMFLQSGFSPFTFSNFTEAQA 895
                               *******************665.3466999*****************99998...9***************************** PP

                      GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++l+++ +++g++ve +  slvl+W++++L+s+S Wr
  Tp57577_TGAC_v2_mRNA5199 896 ECLVQRAPVRGFQVERKPSSLVLCWQRKELISISTWR 932
                               ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.2547912IPR005202Transcription factor GRAS
PfamPF035142.3E-88575932IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
LILEDRVDHR PGSIEFVLKM VYLRTESVKF WSISDHFELQ LIECRSSLFL FQSSVFLLRL  60
LVSKYHGTCY IYHKLFPSLF YFIKLIVLLI YCKKETERER ERERERERER EALYHFYTQK  120
QHASILTKTQ TTNKVCCVCC STQTSNNIRN SLSLSLSLSL SHTHTHIHSC LSLFTSSTPL  180
TTISTCHTTS HKTTNFKMKD MPLPFEEFQV KGGVLDYFSS SSNSASDSFS LLLNQPQEQQ  240
NQQNWTLVKE DYCYVEPTSV LDSRRSPSPP ISSSTMSSSL GSGSNNGNSS NNNNTSMVVV  300
SENLAPNLSN EESLENSGEK CDGMRMEDWE GQDQSLLRLI MGDVEDPSVG LNKILQNSGV  360
GSQNVDFHGG FGVLEHQQGL NNNNMEGSVQ QGNYNVFPFM SENIDSHNAK SGPESMFGNY  420
PMLTSSSTSG VFCSQQQQNQ EFGVVDDKPQ VINPNFMMNH NQVQFSENPS FFVPLPYPHV  480
QEQQVFSQSQ LKRPLFDAVG NNYSVPKLPL LDSGQEMFAR RHQQQTQLPL FPHQHLQQHE  540
QQQQSSVVPF TKQQKVSSTI AGDDASNQLQ QSIFDQLYKT AELIEAGNPV QAQGILARLN  600
HQLSPIGKPF LRASFYVKEA LQLMLHSNGN NLNAFSPISF IFKIGAYKSF SEISPVLQFA  660
NFTCNQVLIE ALERFDRIHI VDFDIGFGVQ WSSFMQELVL RGNGIPSLKI TAVVSPSSCN  720
EIELNFTQDN LSQYAKDLNM PFEFRILNME FLNSPSFPQP AHFFDSNEAI GVNFPVSSFI  780
GYPSSFPLAL HFVKQLRPKV VVTLDKICDR FDVPLPTNVV HVLQCYSSLL ESLDAVNVNL  840
DVLQKIERHF IQPNINKIVL GHHHRSHEKL PPWRNMFLQS GFSPFTFSNF TEAQAECLVQ  900
RAPVRGFQVE RKPSSLVLCW QRKELISIST WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2958193127378Protein SCARECROW
5b3h_A3e-2958193126377Protein SCARECROW
5b3h_D3e-2958193126377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199109RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5199
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1212380.0AC121238.17 Medicago truncatula clone mth2-34p9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506474.10.0scarecrow-like protein 6
TrEMBLA0A2K3P5X80.0A0A2K3P5X8_TRIPR; SCARECROW-like protein 6-like
STRINGXP_004506474.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-125GRAS family protein