PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4925
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 361aa    MW: 39957.9 Da    PI: 5.7875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4925genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-08204251455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++ Lq
  Tp57577_TGAC_v2_mRNA4925 204 SHSLAERARREKINARMKLLQELVPGC----DKISGTALVLDEIINHVQTLQ 251
                               8*************************9....777888999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-15198269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-8198255No hitNo description
PROSITE profilePS5088814.246200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14201268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-6204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEQQPTGTIH ALDSVQFNEE IQGIMIPAPA PENASSFTAL LELPPTQAVE LLHLPDCDGT  60
DSGRLSCCHV SVNQKPYLQN SSNGNLTFPT NAALIERAAK FSVFAGENTS PGEVRLFPAV  120
SGLNLESVKN EPQETDSNPC STQECVSDPA VENKNQRNVK RKEREKKAKP SSKKSKSVAD  180
ETSGDGEKLP YVHVRVRRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKISGTALVL  240
DEIINHVQTL QRQVEILSMK LAAVNPRIDF NLDRLLASDG SSLMDSNLPS MVTPLMWPEI  300
PLNINRPHYQ QQWQLDAFHQ PLWGREEDNH HFMTPENSLL SYDSPANSAS LHSNQLKMEL  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4925
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493546.10.0transcription factor bHLH48
SwissprotQ8VZ021e-99BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2Z6NKA40.0A0A2Z6NKA4_TRISU; Uncharacterized protein
STRINGXP_004493546.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-98bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]