PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4899

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 159aa MW: 17468.8 Da PI: 8.3205

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4899	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	40.8	4.6e-13	35	71	25	60
zf-Dof 25 slsqPryfCkaCrryWtkGGalrnvPvGggr.rknkk 60 s +q y+Ck+ ryWt+GG++rn+P+ gg rknkk Tp57577_TGAC_v2_mRNA4899 35 SHNQDIYLCKTSIRYWTQGGSFRNIPLEGGHpRKNKK 71 568999********************96664388887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.4E-9	34	71	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-6	38	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MEGITPISCT RAAIELSNLQ TKQHLVLLLQ QTTDSHNQDI YLCKTSIRYW TQGGSFRNIP 60 LEGGHPRKNK KIITSSSPSL SSSISSHNMI KGNDLSLAIP AMDKYHVAGM LCSSPYVEIS 120 DNNTCSNGLI NSANNYAPNS LMMMSSSNAQ YYQSWFIM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4899

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494837.1	1e-23	dof zinc finger protein DOF4.1-like
TrEMBL	A0A2K3NDE9	1e-103	A0A2K3NDE9_TRIPR; Dof zinc finger protein
STRING	XP_004494837.1	4e-23	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	1e-08	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4899