PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 756aa MW: 82672.9 Da PI: 6.0162 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W +I +++g ++t+ q++s+ qk+ Tp57577_TGAC_v2_mRNA4828 24 RERWTEEEHDRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.06E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.037 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.5E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.9E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MDAYSSGEEV LVKTRKPYTI TKQRERWTEE EHDRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALVKG AALGQALDID IPPPRPKRKP SNPYPRKTNV GTPTLHSGAK 120 YGKPLIAVAS SHGKQAMDFE KESPPEKHKD EERPTTGKEN NNENCSKVFT ILKEAPCSSV 180 SSAIQSSISN LVPQTNSCTL REFTPSVKEV ITRDETNKSF PATEIENQML EIDDGKQTHK 240 TDGTCKTSKL DNSCSPKSVQ VEKTDGLTSA LTIDEMQSNQ NYPRHVTVHV VDGNLGTSTQ 300 TPSQDMLIQD STFQPIGGIN GQRNLFTNSA ASNTSESQNN MARSSIHQSF PPCPPFAQHN 360 HDDYQSFLNM SSTFSSLLVS TLLQHPAAHA AASFAATFWP YANIESSADS PACSQGAFPS 420 RQIGSPPGVA AIAAATVAAA TAWWAAHGLL PLCAPLHTAF ACPPASATVV PSTNLSEAPP 480 KTKQGDITLQ NPPLQDQIFD PEDSEALIAQ HSAAKSPAVS LSESEESGDA KLNTSSKATI 540 NLDINRPISE NPDPNKMEGR KLVDRSSCGS NTTSSCEETD VLEKDDKEKE DSKAPEADHL 600 ATDPSSRRYR SISNLIDSWK EVSEEGRLAF RALFSREVLP QSFSPPHDLI DKDLQTDNMK 660 HNEQNVDDRD QLDSMKCSSN CDMVQQNLPF VQNNNEEDGL LTLGLGQGKL KTRRTGFKPY 720 KRCLVEAKEN RVGTACNQVE ETGPKRIRLE GGSST* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4828 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC150443 | 0.0 | AC150443.2 Medicago truncatula chromosome 7 clone mth2-71o19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494878.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_004494879.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_004494880.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_027188030.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A0A2K3NWB0 | 0.0 | A0A2K3NWB0_TRIPR; MYB transcription factor MYB 114 | ||||
STRING | XP_004494878.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 9e-97 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4828 |