PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4787
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 572aa    MW: 62462.1 Da    PI: 5.5063
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4787genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.7e-28323381259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                Dg +WrKYGqK+ kg++++rsYYrC++a gCpv+k+++rs +d+++v++tYeg Hnh+
  Tp57577_TGAC_v2_mRNA4787 323 PDGGHWRKYGQKMAKGNPCARSYYRCSMAaGCPVRKQIQRSPQDTTIVITTYEGYHNHS 381
                               58999***********************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30309383IPR003657WRKY domain
SuperFamilySSF1182902.62E-25315383IPR003657WRKY domain
PROSITE profilePS5081129.218317383IPR003657WRKY domain
SMARTSM007741.8E-31322382IPR003657WRKY domain
PfamPF031069.9E-24324380IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MARESEISMD SDPIDNNTIV LNSFTEDINN PMLTHSPKNS IDAVDTQSTI PFQLINLNCS  60
NENQTSHETL KEFDFFNVNN NNDHNKVVSL SAFALDNDTN IPSLLKIKLN TGTSDLLNPN  120
TSGDQSMVDD GMSPTSDDKS IKNQMAILQG ELDRANMENR RLKLILDQLQ TDYDTLRMHF  180
NKVMHYRMVD EKSKEKDRIE NGKVLVPGQI IDFELAPNAE TEMDLDPSSS SIGRKRSRDE  240
LGSLTNNTGV ASRELVLEKN INVSDEKKEL GKGIENEDSP IGNADKTQSL NPSNNFSSIH  300
QVEDALGKAR VSVRARSEED MVPDGGHWRK YGQKMAKGNP CARSYYRCSM AAGCPVRKQI  360
QRSPQDTTIV ITTYEGYHNH SLPPKAAEMA QRTSSAAKMF LTGSTSSKDG KMNVDFVKKT  420
LHPESSSSPT ISTNSLLPIV TIDYTKPSSS HPSRRQNHQQ IPGNPYNFSS SSSSKIPQDQ  480
SKLSGLYMSP NSTNLSEIVV PNVTQAFSEA MAADPNFTAA LAALITSIMR TSQSTGNATT  540
SSTTTSTAAA TDGTGNNNAN LASSDNNNGK E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23309384175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4787
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132527.11e-154hypothetical protein PHAVU_011G101900g
TrEMBLA0A2K3LD450.0A0A2K3LD45_TRIPR; WRKY transcription factor 6-like protein
STRINGXP_007132527.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-71WRKY family protein