PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4734 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 82aa MW: 9443.98 Da PI: 10.6286 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.6 | 1.4e-32 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++ Tp57577_TGAC_v2_mRNA4734 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 74 79***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-41 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.543 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.10E-40 | 17 | 79 | No hit | No description |
SuperFamily | SSF55455 | 8.76E-31 | 17 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-34 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-28 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-34 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-34 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MAFQNQSMSD SPQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANNRYLKL L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 2e-21 | 17 | 81 | 1 | 65 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 2e-21 | 17 | 81 | 1 | 65 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 2e-21 | 17 | 81 | 1 | 65 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 2e-21 | 17 | 81 | 1 | 65 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3mu6_A | 2e-21 | 17 | 81 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-21 | 17 | 81 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-21 | 17 | 81 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-21 | 17 | 81 | 1 | 65 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-21 | 16 | 81 | 1 | 66 | MEF2C |
5f28_B | 2e-21 | 16 | 81 | 1 | 66 | MEF2C |
5f28_C | 2e-21 | 16 | 81 | 1 | 66 | MEF2C |
5f28_D | 2e-21 | 16 | 81 | 1 | 66 | MEF2C |
6byy_A | 2e-21 | 16 | 81 | 1 | 66 | MEF2 CHIMERA |
6byy_B | 2e-21 | 16 | 81 | 1 | 66 | MEF2 CHIMERA |
6byy_C | 2e-21 | 16 | 81 | 1 | 66 | MEF2 CHIMERA |
6byy_D | 2e-21 | 16 | 81 | 1 | 66 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4734 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF159804 | 1e-85 | KF159804.1 Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSa (AGa) mRNA, complete cds. | |||
GenBank | KJ470633 | 1e-85 | KJ470633.1 Medicago truncatula AGAMOUSa (AGa) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572611.1 | 9e-48 | floral homeotic protein AGAMOUS isoform X8 | ||||
Swissprot | Q40872 | 4e-41 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A1S3ECE0 | 2e-46 | A0A1S3ECE0_CICAR; floral homeotic protein AGAMOUS isoform X8 | ||||
STRING | XP_004485952.1 | 9e-47 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.2 | 2e-31 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4734 |