PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 18182.1 Da PI: 8.6604 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 79 | 8e-25 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+ lrr+C+++C++ p++ p++q + + +++k++G++ +l+ll+++ +++ ++++sl+yeA r+ +P +Ga+g++ Tp57577_TGAC_v2_mRNA4711 4 SCNGCRALRRGCSENCIIKPCLewircPETQGRVTLFLAKFYGRTGLLNLLANATNKNSIAVFKSLLYEASGRLANPTHGALGLL 88 6*************************9********************************************************** PP DUF260 81 lklqqqleqlkaelallke 99 l++++ +++++e++l+++ Tp57577_TGAC_v2_mRNA4711 89 LTGEWSRCEAAVEAVLTGS 107 *************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.302 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-20 | 4 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MRSSCNGCRA LRRGCSENCI IKPCLEWIRC PETQGRVTLF LAKFYGRTGL LNLLANATNK 60 NSIAVFKSLL YEASGRLANP THGALGLLLT GEWSRCEAAV EAVLTGSNIN VVTVVDGQTS 120 PCTRIVLKSD LENGNMKTAE ASSVPLILKT IYSHARASLF FLLDLVCS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4711 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013470179.1 | 5e-63 | LOB domain-containing protein 42 | ||||
Swissprot | Q9ZW96 | 3e-44 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A2K3MLT6 | 1e-98 | A0A2K3MLT6_TRIPR; LOB domain-containing protein | ||||
STRING | AES84556 | 2e-62 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14785 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 4e-42 | LOB domain-containing protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4711 |