PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4709
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 507aa    MW: 57329.3 Da    PI: 8.6533
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4709genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.72.5e-33137191155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Tp57577_TGAC_v2_mRNA4709 137 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 191
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.489134194IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-31135192IPR009057Homeodomain-like
SuperFamilySSF466892.69E-16136192IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-22137192IPR006447Myb domain, plants
PfamPF002493.2E-9139190IPR001005SANT/Myb domain
PfamPF143791.2E-24269316IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MNACMSVSVV ILIIIIIIII IIIIIIIIII IIIIIISTTI IRIYKFMSPV TGWDISTILE  60
VPCLIILFLV FEVVERAYFS FKGTVFRKRS NMYHHHQHQG KNIHSSSRMS IPSERHMFLQ  120
TGNGSSDSGL VLSTDAKPRL KWTPDLHARF IEAVNQLGGA DKATPKTVMK LMGIPGLTLY  180
HLKSHLQKYR LSKNLHGQSN SNVTHKLTTH SASVTDEXXX XXXXXXXXXX XXXXXXXXXD  240
YTLHVIFFGM NILSLRFYAN FHVPFGRDIH INEALQMQIE VQRRLNEQLE VQRHLQLRIE  300
AQGKYLQSVL EKAQETLGRQ NLGIVGLEAA KVQLSELVSK VSSQCLNSTF SEMKELQGFC  360
PPNDGSMDSS CLTSSDRSQK EQEIIQNGGF GLRHFNNNNH ELAGSVQNIR NNEVLKWCVD  420
EVKKNSTNFL TPLGKNNDLE RNHGNLSMNI GVETRTETIK SVEDNNKMQQ SSNYFSASRL  480
DLNSGGDHNE GATNCKQLDL NRFSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-21136193158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-21136193158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-21136193158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-21136193158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-21136193158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-21136193158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-21136193158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-21136193158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4709
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1469491e-158BT146949.1 Medicago truncatula clone JCVI-FLMt-19I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596817.10.0myb-related protein 2 isoform X2
SwissprotQ9SQQ91e-115PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2Z6N8G60.0A0A2Z6N8G6_TRISU; Uncharacterized protein
STRINGAES670680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-117G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]