PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 373aa    MW: 42697.2 Da    PI: 7.7975
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4661genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.33e-431172422133
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 
                               ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+ai elt+++++    + +++++ s s+  
  Tp57577_TGAC_v2_mRNA4661 117 PVKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNNSKEAIEELTRSKNNIG--SGDDDDERSFSS-- 197
                               68**************************************************************44444..322233333331.. PP

                       TCP  87 sgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                 +++ +  ++ ++ k+a++  +++k+s++k+r rarert+e m ++
  Tp57577_TGAC_v2_mRNA4661 198 --SSSDEGDEEVRKMKRAQKETSKMKDSKEKSRTRARERTTEMMIQD 242
                               ..22222225555555555557799*****************99766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-36118238IPR005333Transcription factor, TCP
PROSITE profilePS5136935.526119177IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.677221238IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MFPSTYCSLG PYPCYNPNSS SSSHSYPPFT FLTPDQNVSS NNTTNNNNNN INTFLHDPTI  60
SIPYTQTTHH HHVPINPETL TNWAVADYAA MLKQDLSGTS HYGSISNLLA KKPVKKPVKK  120
DRHSKIHTSQ GLRDRRVRLS IEIARKFFDL QDMLGFDKAS NTLEWLFNNS KEAIEELTRS  180
KNNIGSGDDD DERSFSSSSS DEGDEEVRKM KRAQKETSKM KDSKEKSRTR ARERTTEMMI  240
QDLKEKYPEN VQNQQILHQL MPNDEESSKS LQRDDIFNFI EESIVIKRKL KKSSHHHHHH  300
QQNNLMIPKE TSFEHNSDCH DSPMLSPNWD ANNNNSTSGR SNFSAISRMN LSSGLQIFGK  360
SWEDCNTSPN RY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110119KKPVKKPVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447731.11e-170transcription factor DICHOTOMA
TrEMBLA0A2K3LYY70.0A0A2K3LYY7_TRIPR; CYC1 (Fragment)
STRINGGLYMA08G28691.18e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-25TCP family protein