PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 373aa MW: 42697.2 Da PI: 7.7975 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 139.3 | 3e-43 | 117 | 242 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+ai elt+++++ + +++++ s s+ Tp57577_TGAC_v2_mRNA4661 117 PVKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNNSKEAIEELTRSKNNIG--SGDDDDERSFSS-- 197 68**************************************************************44444..322233333331.. PP TCP 87 sgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +++ + ++ ++ k+a++ +++k+s++k+r rarert+e m ++ Tp57577_TGAC_v2_mRNA4661 198 --SSSDEGDEEVRKMKRAQKETSKMKDSKEKSRTRARERTTEMMIQD 242 ..22222225555555555557799*****************99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.7E-36 | 118 | 238 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.526 | 119 | 177 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.677 | 221 | 238 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MFPSTYCSLG PYPCYNPNSS SSSHSYPPFT FLTPDQNVSS NNTTNNNNNN INTFLHDPTI 60 SIPYTQTTHH HHVPINPETL TNWAVADYAA MLKQDLSGTS HYGSISNLLA KKPVKKPVKK 120 DRHSKIHTSQ GLRDRRVRLS IEIARKFFDL QDMLGFDKAS NTLEWLFNNS KEAIEELTRS 180 KNNIGSGDDD DERSFSSSSS DEGDEEVRKM KRAQKETSKM KDSKEKSRTR ARERTTEMMI 240 QDLKEKYPEN VQNQQILHQL MPNDEESSKS LQRDDIFNFI EESIVIKRKL KKSSHHHHHH 300 QQNNLMIPKE TSFEHNSDCH DSPMLSPNWD ANNNNSTSGR SNFSAISRMN LSSGLQIFGK 360 SWEDCNTSPN RY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 119 | KKPVKKPVKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4661 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013447731.1 | 1e-170 | transcription factor DICHOTOMA | ||||
TrEMBL | A0A2K3LYY7 | 0.0 | A0A2K3LYY7_TRIPR; CYC1 (Fragment) | ||||
STRING | GLYMA08G28691.1 | 8e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-25 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4661 |