PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4635
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 373aa    MW: 41560.5 Da    PI: 8.4863
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4635genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-1966116256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                               ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g+
  Tp57577_TGAC_v2_mRNA4635  66 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDTAARALRGA 116
                               689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-2966123IPR001471AP2/ERF domain
PfamPF008476.1E-1366115IPR001471AP2/ERF domain
PROSITE profilePS5103220.75866123IPR001471AP2/ERF domain
CDDcd000181.50E-3166123No hitNo description
SMARTSM003804.9E-3566129IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2067123IPR016177DNA-binding domain
PRINTSPR003676.8E-86778IPR001471AP2/ERF domain
PRINTSPR003676.8E-889105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
LKFKKYAFRM RVKDRGAKRK DVKDAAFKFK FINDLQLKLI RFTNMVAPIT DNGIRSRKKS  60
SRGHHRFVGV RQRPSGRWVA EIKDSLQKVR LWLGTFDTAE EAARAYDTAA RALRGANART  120
NFDLPESGTN GGVGAKRGSG SNFMLENTEP FSFEDVSDSG SGSEHGLLGA LKAKLFDGKE  180
AKFSFSFPSV SAVSKSTQNC SEKKQSSATY CLSQMNETHI NTMHSSLSNS SNTFAKSVVI  240
PNHDHEICQT PSLTNMLWFN ELEFELPWPN QSHVHHDDNS TNLFASASAS NFSWPLIESN  300
VNMTCIDQGL LNSNRNDQIN MMSMQLPQVG GANEGFWTLD QQQQFVQCEE NNSWFGSAGS  360
WDPLIYVPSE LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-15641221271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4635
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1378660.0BT137866.1 Medicago truncatula clone JCVI-FLMt-4B14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462605.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLA0A2K3NNH10.0A0A2K3NNH1_TRIPR; Ap2/erf domain-containing transcription factor
STRINGXP_004485926.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-17related to AP2 11