PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4617

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 219aa MW: 23848.4 Da PI: 4.6482

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4617	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.1	4.8e-30	35	93	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver++ dp+v+ +tY+++Hnh Tp57577_TGAC_v2_mRNA4617 35 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkSCPARKQVERNHVDPTVLLVTYTSDHNHA 93 69***********************998**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-30	29	95	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-25	31	95	IPR003657	WRKY domain
SMART	SM00774	2.0E-33	34	94	IPR003657	WRKY domain
PROSITE profile	PS50811	30.951	35	95	IPR003657	WRKY domain
Pfam	PF03106	4.9E-25	36	92	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MERSSLSSSA KRRGIKKRVV EIPMKDVEGT NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC 60 SSSKSCPARK QVERNHVDPT VLLVTYTSDH NHAVPAPRNY RNTSNAAASN KDSESEQEPE 120 TEPEERFTDL GEEPLISPTD ELGGWLGEVD AIASPAGLEC PVFSEAEVSM LGEEEMSLFA 180 DLGELPECSP VFWRGRRSSD GGAGDVSVGP LVEANCSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-19	17	96	6	80	Disease resistance protein RRS1
5w3x_D	5e-19	17	96	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4617

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013462609.1	1e-132	probable WRKY transcription factor 65
Swissprot	Q9LP56	3e-55	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2K3N5Z6	1e-158	A0A2K3N5Z6_TRIPR; WRKY transcription factor
STRING	XP_004485928.1	1e-124	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-56	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4617

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]