PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4455

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

TCP

Protein Properties

Length: 353aa MW: 39955.9 Da PI: 8.7498

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4455	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.4	2.8e-30	84	196	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesss 79 g kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl+ ak +i+el+ ++ ++ +++ + Tp57577_TGAC_v2_mRNA4455 84 FGTKDRHSKVYTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNIAKDEIDELPPLQIPQGNFTlgypsfaN----I 164 589*************************************************************6666655544422211....1 PP TCP 80 ssasnsssg......................k 89 s+++ s+++ Tp57577_TGAC_v2_mRNA4455 165 SNDDVSQNNtsicksnskqflgeivtnkgnwI 196 11111111111222222223333333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.4E-29	85	203	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.527	86	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
LTTKKIHKEE FKIREKFNKS NNNILQWEEI NNNNERKKMI NIPKDAEFPL KQEVLPSNAS 60 TASSSTSQWL KLKDPRIVRV SRAFGTKDRH SKVYTIKGLR DRRVRLSIQT AIHLYDLQDR 120 LGLNQPSKVV DWLLNIAKDE IDELPPLQIP QGNFTLGYPS FANISNDDVS QNNTSICKSN 180 SKQFLGEIVT NKGNWINRNE AEKEKKEVDA NCDCAQNVLP NNLMSHLVSD NVSNKIISGG 240 ANQPSFLGLL NTMPLDYQLE TSSNHVAHEL SNFGFVNQIK HIDGIDVVPF PSSLSLSTQQ 300 YFPSHVGTME MDPRQINYSY DQMWSSSSQN NSLNPTQQLI RVTPKDQGFP SK*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

LTTKKIHKEE FKIREKFNKS NNNILQWEEI NNNNERKKMI NIPKDAEFPL KQEVLPSNAS  60
TASSSTSQWL KLKDPRIVRV SRAFGTKDRH SKVYTIKGLR DRRVRLSIQT AIHLYDLQDR  120
LGLNQPSKVV DWLLNIAKDE IDELPPLQIP QGNFTLGYPS FANISNDDVS QNNTSICKSN  180
SKQFLGEIVT NKGNWINRNE AEKEKKEVDA NCDCAQNVLP NNLMSHLVSD NVSNKIISGG  240
ANQPSFLGLL NTMPLDYQLE TSSNHVAHEL SNFGFVNQIK HIDGIDVVPF PSSLSLSTQQ  300
YFPSHVGTME MDPRQINYSY DQMWSSSSQN NSLNPTQQLI RVTPKDQGFP SK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-18	91	145	1	55	Putative transcription factor PCF6
5zkt_B	1e-18	91	145	1	55	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4455

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013451026.1	1e-169	transcription factor TCP13
TrEMBL	A0A2K3NUJ4	0.0	A0A2K3NUJ4_TRIPR; Transcription factor TCP13-like protein
STRING	XP_004489468.1	1e-104	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	1e-42	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4455