PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4392
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 421aa    MW: 48972.8 Da    PI: 7.8919
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4392genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.33.4e-07106155855
                       AP2   8 wdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA4392 106 RHRWTGRFEAHLWDkLSWNItqKKKGKQ-GAYDEEESAARAYDLAALKYWG 155
                               799***********88887784446666.9*******************98 PP
2AP252.21.5e-16198249155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Tp57577_TGAC_v2_mRNA4392 198 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 249
                               89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.8382163IPR001471AP2/ERF domain
PfamPF008476.9E-5106155IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-10106164IPR016177DNA-binding domain
SMARTSM003804.2E-10106169IPR001471AP2/ERF domain
CDDcd000183.70E-13106165No hitNo description
Gene3DG3DSA:3.30.730.106.5E-9106164IPR001471AP2/ERF domain
PfamPF008475.4E-12198249IPR001471AP2/ERF domain
CDDcd000185.22E-25198259No hitNo description
SuperFamilySSF541719.81E-18198258IPR016177DNA-binding domain
SMARTSM003801.6E-26199263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18199258IPR001471AP2/ERF domain
PROSITE profilePS5103218.887199257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAMLIENEVM CMRKSMEEKD VKGARSVKRK RREHAIGPII DDDDNHNKKM IKQHIGENST  60
TNTTKRSSRF RGVSRYQLFL FWYKGININY YCVYFSNKIL ELYTNRHRWT GRFEAHLWDK  120
LSWNITQKKK GKQGAYDEEE SAARAYDLAA LKYWGTSTFT NFQTSDYEKE IEIMKTMTKE  180
EYLATLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAARAY  240
DIAAIEYRGI HAVTNFELSS YIKWLKPESD KEEKHESQAL PNESQTMESP NNSTLLQESK  300
LLALQKSFFI PNCINSNEKQ DSSSSFENKN YHFLSNKSTS PTALSLLLRS SLFRELLEKN  360
SNVSEDEVTS EHHQQQQQIA SDDELCGTFY DGIDNISFDF DPNICNIELQ ERDLNSIFCT  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4392
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379941e-154AC137994.19 Medicago truncatula clone mth2-23f15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626027.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
TrEMBLG7KYV00.0G7KYV0_MEDTR; AP2 domain transcription factor
STRINGAES773350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.37e-80AP2 family protein