PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4368
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 556aa    MW: 60716.7 Da    PI: 5.455
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4368genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29294352259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+H h 
  Tp57577_TGAC_v2_mRNA4368 294 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAhGCPVRKQVQRCAEDRSILITTYEGNHIHA 352
                               8***************************99**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-33278354IPR003657WRKY domain
SuperFamilySSF1182904.58E-27286354IPR003657WRKY domain
PROSITE profilePS5081128.552288354IPR003657WRKY domain
SMARTSM007744.3E-36293353IPR003657WRKY domain
PfamPF031064.3E-26294351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MDTTINNNNK NKNKSPSTTI PFQVNLTSSN DSLSDHDENR PIINELDFFS TNNHENIASS  60
STSAPPYHHI HDHYTNPSSL LELKVNTSLN LLTTNASNDQ SMVDADIPSN SEDKRGQLEA  120
VVLQGELERL KVENHQLRNM LEERNRNYST LQMHLVSLMQ ERKVEDCNED KKQVEMKQNG  180
NGGFLVPRQF MDLGLATNNS NVAADEPRSQ DQSKAVGNNN EEGSKDEALV PDHDMKESDK  240
GNERDDSPPN RVLPANNSNN VPNFSPQTNV EQAEATMRKA RVSVRARSEA AMINDGCQWR  300
KYGQKMAKGN PCPRAYYRCT MAHGCPVRKQ VQRCAEDRSI LITTYEGNHI HALPPAAMEM  360
VQTTSAAARM LLSGPMTSPD GLMNPNFLTR AILPYSSSIA TISASAPFPT VTLDLTEPPN  420
SNQFPNNKNT NQFQFPFAQN FANSLLPQIF GQTLLNQTTF SGLQMSQDGE NSQLGNQSQQ  480
QLADTVTAIA SDPNFTTALA AAITSIIGAA QPNNGNNSTI NNGNSTIANN NNGNVTSNNN  540
ANGSNKGNNP NSPGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23280356176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4368
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596950.10.0probable WRKY transcription factor 31 isoform X1
TrEMBLA0A2K3N9750.0A0A2K3N975_TRIPR; WRKY transcription factor 6-like protein (Fragment)
STRINGAES672010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-93WRKY family protein